DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and dpr-1

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_506457.2 Gene:dpr-1 / 187759 WormBaseID:WBGene00001062 Length:356 Species:Caenorhabditis elegans


Alignment Length:390 Identity:86/390 - (22%)
Similarity:142/390 - (36%) Gaps:115/390 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRAS-GYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAV 327
            ||||....: .:|:.:.||..|..||||:|:....|.||....|.:...:|..|:.||.:.||..
 Worm    16 CLVCTITENVRFHFGSTTCLACASFFRRTVSLKIQYVCKQSNNCIVSHAVRSGCRSCRFQNCLKS 80

  Fly   328 GMRPECVVPE---NQCAMKRREKKAQKE----KDKMTTSPSSQHGGNGSLASGGGQDFVKKEILD 385
            ||:...|..:   |:.....||...|.:    ::..|::..:.||            |.|:|.|:
 Worm    81 GMKTNMVRGKRDINKVPKYIRESMQQGDNMTVRNYTTSTLETLHG------------FPKQEELE 133

  Fly   386 LMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPD 450
            |           |::.::      |.|:..::.:||...|.                       |
 Worm   134 L-----------PVVKED------APNLLIVSPDQLLDYYL-----------------------D 158

  Fly   451 ENESQ-TDVSFRHITEITILTVQLIVE---FAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARR 511
            .||.: ..:|..|:..:..|..|..||   ..|..|....|..||::.|::......:.|.....
 Worm   159 LNEKEPLPLSKIHLNTLGQLNQQNHVESEFICKNCPGTDLISTEDKMILIQYVKFANLWLDALWD 223

  Fly   512 YDHSSD--------------------SIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKV 556
            ..|:.|                    |.|.:|       .|:..|.        ..|    ::.:
 Worm   224 ELHAKDKQDKQNLVHCGEFADYDRLFSTFISN-------LYESVGQ--------FLC----NLNL 269

  Fly   557 DNVEYALLTAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTEL 621
            |.|||:.|.:.||:       |..:|:     :..||:|.....:.|.|.:|:.|.|....:.|:
 Worm   270 DIVEYSALKSFVIW-------KLGVVD-----FSITLKIVAQEHYLGVSAALIEYYKTEKNMEEM 322

  Fly   622  621
             Worm   323  322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 29/90 (32%)
NR_LBD_EcR 420..652 CDD:132736 45/226 (20%)
dpr-1NP_506457.2 ZnF_C4 15..85 CDD:197701 25/68 (37%)
HOLI 190..338 CDD:214658 33/164 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165558
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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