DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-202

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503210.1 Gene:nhr-202 / 187409 WormBaseID:WBGene00019742 Length:414 Species:Caenorhabditis elegans


Alignment Length:430 Identity:89/430 - (20%)
Similarity:147/430 - (34%) Gaps:135/430 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRR--KCQECRLKKCLA 326
            |.||.....|.|:.|.||..|..||||....:.:..||....|  |.|...  .|::||||||..
 Worm    22 CPVCYKPPHGIHFGAYTCRACAVFFRRFGASNNLKPCKKNNVC--DFYKNGYVSCKKCRLKKCFE 84

  Fly   327 VGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGG------QDFVKKEILD 385
            :||:.|               ..|.|:|     |..:.....|||   |      :.|:.:....
 Worm    85 IGMKIE---------------NFQFERD-----PYKRSSICISLA---GRIPPTLETFLARPSFI 126

  Fly   386 LMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPD 450
            ::|. ||:.|..|.:..::      :.:...:|.:|.         .|.|.|.:..  .|:.:..
 Worm   127 ILTA-PPKDAQNPKVYIDV------KFLIDKSYGELL---------KGIETPIQTS--NILKKLA 173

  Fly   451 ENESQTDVSFRHIT---------EITILTVQLIVEFAKGLPAFTKIPQ---EDQITLLKA----- 498
            ....|...|.|.:|         |:..:....:::.||....|....|   |.||.::|.     
 Worm   174 LGLQQVRGSQRKVTKRLEKFGKDEMFAMWENDMLKVAKWFTYFEDFQQFSSEFQIEIIKKVWIVW 238

  Fly   499 -----------------CSSEVMMLRMAR---------RYDHSSDSIFFANNRSYTRDSYK---- 533
                             |...:|:|:|..         .:|.|..|.:.|...::...::.    
 Worm   239 NGLEKLATTAKMRKRMNCDDILMVLQMENDLVACGKSVEFDLSWCSNYKAEQFAFIDSNWNKHEE 303

  Fly   534 ----MAGMADNIED----LLHFCRQMFSMKVDNVEYALLTAIVIFSDRPGLEKAQLVEAIQSY-- 588
                |..:....|:    |.|.|.|..|.:.|                     .|::||::.:  
 Worm   304 LLELMVQLNPTDEELCYMLCHLCFQQISKQCD---------------------GQILEAVEQFQD 347

  Fly   589 -YIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQ 627
             ..:.|..|.||.     :|...|:..::.|.:|.::..|
 Worm   348 SISNHLHDYYLNH-----LSRPNYSGRIAALMKLNSIAQQ 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 28/88 (32%)
NR_LBD_EcR 420..652 CDD:132736 46/266 (17%)
nhr-202NP_503210.1 ZnF_C4 21..90 CDD:197701 27/69 (39%)
Hormone_recep 183..384 CDD:459675 39/226 (17%)

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