DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-143

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_505317.2 Gene:nhr-143 / 186626 WormBaseID:WBGene00019116 Length:422 Species:Caenorhabditis elegans


Alignment Length:487 Identity:92/487 - (18%)
Similarity:173/487 - (35%) Gaps:132/487 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 ISSGRDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFF 288
            :|.....:|.|.|..| |...:.|.|              |.:|..:..|.|:....|..|..||
 Worm     1 MSCATSPVSSSESSIG-SVESNFDLK--------------CEICCSKGHGNHFGVTACRACAAFF 50

  Fly   289 RRSVTKSAV-YCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPEN---QCAMKRREKKA 349
            ||.:..:.. ..|:..:.|| ....|.:|::|||:||.::||.|:.:..:.   ||::..|||..
 Worm    51 RRMIVGTGYRQKCRSYKTCE-PKDGRWQCKKCRLEKCYSLGMTPDNIQHDRDLFQCSLIFREKNR 114

  Fly   350 QKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIP 414
                                          |:::::                         .|||
 Worm   115 ------------------------------KRKLIE-------------------------ENIP 124

  Fly   415 SLTYNQLAVIYKLIWYQDG---YEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLIVE 476
            . |..::..|..||.::..   :|:|:                 |.:....|.|.|....::..:
 Worm   125 K-TVEKILGIPHLILFRKKERLHERPA-----------------TYIDLSSIIEKTEKIFRMEPD 171

  Fly   477 FAKGLPAFTK---------IPQEDQITLLK------ACSS-EVMMLRMAR--RYDHSSDSIFFAN 523
            |..|:....|         :.|:..::|:|      .||. |..:.:.|.  .|......:.|..
 Worm   172 FDSGMSTLEKLTFGLKQSRLTQQKSLSLIKCYGKEETCSLWEAQLTKTATWLMYFDGFRELPFHQ 236

  Fly   524 NRSYTRDSYKMAGMADNIEDLLHF-----C-RQMFSMKVDN-VEYALLTAIVIFSDRPGLEKAQL 581
            ..|..:..:.:.|..:.:......     | ::.|.:..|: |:|........:|.|..:|:.:.
 Worm   237 KFSMFKRMWHVWGRLERLSMTAEMRVNGNCGKRQFVVSHDSLVDYDATHVKSEWSTRYSMEELRS 301

  Fly   582 VEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLK---------- 636
            :..|.:||.|:|....:|.:..|: .|.|....|.:....:.||....|:...|:          
 Worm   302 LLDIPTYYSDSLVDSFINVNPTDT-ELAFILGQLCLKLTGKMLGGDVEEVTQKLQDVLANDLHEH 365

  Fly   637 LKNRKLPKFLEEIWDVHAIPPSVQSHLQITQE 668
            .|::::.::...:..:.:|....||.|..|::
 Worm   366 YKDQEVSRYAHRLTKLLSINNDWQSLLNKTRD 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 28/93 (30%)
NR_LBD_EcR 420..652 CDD:132736 46/269 (17%)
nhr-143NP_505317.2 ZnF_C4 25..94 CDD:197701 23/83 (28%)
Hormone_recep 193..398 CDD:278530 39/206 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165496
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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