DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-190

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503276.2 Gene:nhr-190 / 185999 WormBaseID:WBGene00018622 Length:405 Species:Caenorhabditis elegans


Alignment Length:480 Identity:98/480 - (20%)
Similarity:170/480 - (35%) Gaps:166/480 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 PAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRK---- 315
            |||......|::||..:.|.|:..|:|..|..||||:|.:||.         ..||...|:    
 Worm     2 PAPLNLSGPCVICGQPSHGRHFGVLSCRACAAFFRRAVMRSAK---------SQDMVCERESCSL 57

  Fly   316 ------CQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQH----GGNGSL 370
                  |:.||||.|...||.|               .|.|..:|.:::|..|.:    |...||
 Worm    58 KDRIQCCKICRLKMCYDAGMDP---------------NKFQTGRDLISSSSRSSNLSSVGSPQSL 107

  Fly   371 ASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYE 435
            |     :|:.:..| ::.|.|.:.::..::.|           .|..:.::..:         ||
 Worm   108 A-----NFLGRPEL-ILFCSPDRASSSKMIVD-----------VSYLFEEMMKV---------YE 146

  Fly   436 QPS--------EEDLRRIMSQPDENESQTDV------------SFRHITEITIL-TVQLIVEFAK 479
            .||        |..|.|:..:.::..|:.::            ||....|.:.| |.|....||:
 Worm   147 TPSCLPSPCQFENSLERMTFEMEDLNSKREIPNLQFQTSFDKNSFTRFWENSFLKTAQWFSTFAE 211

  Fly   480 GLPAFTKIPQEDQITLLKACS---------SEVMMLRMARRY----------------DHSSDSI 519
            .....|||..:    :||:..         ||..:.|..:.:                :...|..
 Worm   212 FRELDTKIKTD----ILKSAGGLWIRLERMSETSVQRRKQNFGTNVMMCGEGKCVNVNEFDMDLS 272

  Fly   520 FFANNRSYTRDSYKMAGMA--DNIEDLLH---------------FCRQMFSMKVDNVEYALLTAI 567
            |..::.......:.:||::  |.|.|.|:               .|.:....||:..:..:    
 Worm   273 FCTHHSMDQLKPFLLAGISSWDAIVDALNLLIPTNVELNYMFIQLCLKPMLRKVEGHDLEI---- 333

  Fly   568 VIFSDRPGLEKAQLVEA--IQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAE 630
                    :||...|:|  :.:||:.|||    ..|..|.::     |::.|:..|...      
 Worm   334 --------IEKILQVQADNLHNYYMKTLR----TTHYSDRLT-----KMMRIIQLLEAY------ 375

  Fly   631 MCFSLKLKNRKLPKFLEEIWDVHAI 655
                  ::..|....:.:::||.:|
 Worm   376 ------IRELKEKAHIAKVFDVFSI 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 28/99 (28%)
NR_LBD_EcR 420..652 CDD:132736 50/296 (17%)
nhr-190NP_503276.2 ZnF_C4 10..80 CDD:197701 27/93 (29%)
Hormone_recep 178..389 CDD:365875 42/247 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165565
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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