DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-188

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_504064.1 Gene:nhr-188 / 185912 WormBaseID:WBGene00018544 Length:353 Species:Caenorhabditis elegans


Alignment Length:374 Identity:92/374 - (24%)
Similarity:153/374 - (40%) Gaps:95/374 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRAC--EMDMYMRRKCQECRLKKCLA 326
            ||:||..||.::|..|||..||.||||.|.:...|.|:..:.|  ..|.: :.:|:.||.:||:.
 Worm    17 CLICGRNASCHNYGVLTCNACKMFFRRVVIEQITYQCRNWKKCLENADQF-KPRCKACRFEKCVR 80

  Fly   327 VGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEP 391
            :||:      ....||::..|          |.|.|.                            
 Worm    81 LGMK------LGPIAMEKLYK----------TKPMSH---------------------------- 101

  Fly   392 PQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRI-----MSQPDE 451
            |..||..|: .|:|         .|.|.:.   |||..:... |.|:.|::.:.     |.:..|
 Worm   102 PDFATNALI-QEVL---------YLNYTKR---YKLCNFYTS-ENPTLEEMVQTTFWSGMKRKTE 152

  Fly   452 NESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMA-RRYDHS 515
            .:   ::|   :.|.:.....:.||....|.....|..::::.||:..||:.::|..| |..:..
 Worm   153 KQ---EIS---VAEWSFQATYIAVETFLSLEFMNLIENDEKVVLLRNFSSKSIVLDSAMRALNAK 211

  Fly   516 SDSIFFANNRSYTRD---SYKMAGMADNIEDLLHFC---RQMFSMKVDNVEYALLTAIVIFSD-- 572
            .|.:...:......|   |...||..::|:     |   .::..:||..:|:|:| ::::|.:  
 Worm   212 VDRVTTPDGEDIYSDIILSMFSAGFLNSIQ-----CGLVSRVAELKVTELEHAML-SVLLFCNPA 270

  Fly   573 -RPGLEKA-QLVEAIQSYYIDTLRIYIL--NRHCGDSMSLVFYAKLLSI 617
             .|..|:. :|:...|..|..||..|.|  .:..|.|.    :|.||||
 Worm   271 IHPLSERTRRLLATRQKSYSSTLLQYCLLSYQQSGPSR----FADLLSI 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 31/88 (35%)
NR_LBD_EcR 420..652 CDD:132736 50/216 (23%)
nhr-188NP_504064.1 ZnF_C4 16..84 CDD:197701 27/67 (40%)
HOLI 162..322 CDD:214658 40/164 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165619
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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