DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-184

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001023926.1 Gene:nhr-184 / 185730 WormBaseID:WBGene00018415 Length:407 Species:Caenorhabditis elegans


Alignment Length:466 Identity:104/466 - (22%)
Similarity:187/466 - (40%) Gaps:124/466 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 PAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVY---CCKFG--RACEMDMYMRR 314
            ||..:....|.:|...|.|.|:..|:|..|..||||: ::|..:   .|::|  |..:...|   
 Worm     2 PAALLISGPCKICDLPAHGNHFGVLSCRACAAFFRRA-SRSPRFQDKACEYGDCRIFDAGAY--- 62

  Fly   315 KCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPS----SQHGGNGSLASG-G 374
            :|:.||||||..|||               ...|.||::|.:::|.:    ::.....|||:. |
 Worm    63 RCKICRLKKCYKVGM---------------DASKFQKDRDLISSSNAYLKRTKVYAPQSLANFLG 112

  Fly   375 GQDFVKKEILDLMTCEPPQHATIPLLPD---------EILAKCQARNIPSLTYNQLAVIYKLIWY 430
            ..:|:       ::.||.:.:....:.|         ||..:..| |.|        :.||   |
 Worm   113 RPEFI-------ISFEPEKASPFKTVIDVTDLVHKAAEIFQEDLA-NSP--------MPYK---Y 158

  Fly   431 QDGYEQPS--EEDLRRIMSQPDENESQTDVSFRHI--TEITILTVQLIVEFAK---GLPAFTKIP 488
            .:..|:.:  .||||...|    |.....|  |:|  .|..:...|:.:..|.   .||.||.:.
 Worm   159 SNSLEKLTLEMEDLRLRSS----NHKVKIV--RNIGKAESLVFFEQMFLATANWYARLPDFTSLD 217

  Fly   489 QEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFS 553
            ...::.:||  |:.::.:|:              |..:.|..:.::..|..||    ..|.:...
 Worm   218 LRVKLEILK--STWMLWIRL--------------NKLAETAQNQRIKEMGANI----FMCSENTC 262

  Fly   554 MKVD--NVEYALLT--------AIVIFSDRPGLEK--AQLVEAIQSYYIDTLRI-YILNRHCGDS 605
            :.|.  ||:::..|        |.::    |.::|  .|.||.:.......:.: ::|.:.|.:.
 Worm   263 LNVQDINVDWSWCTNYGAEQMQAFLM----PNIDKHWRQPVEDLVKLNPTDMELNFMLIQLCLND 323

  Fly   606 MSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKF---LEEIWDVHAIPPSVQSHLQITQ 667
            ....|..::|....:|..:...|....::.||   .:|.:   |.::..::          ||.:
 Worm   324 AGKKFQGRVLEATDKLLQINADNLHNYYTKKL---NMPSYSGRLTKLMKIN----------QIVE 375

  Fly   668 EE-NERLERAE 677
            |: .||.|:|:
 Worm   376 EDVRERKEKAK 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 28/94 (30%)
NR_LBD_EcR 420..652 CDD:132736 50/254 (20%)
nhr-184NP_001023926.1 ZnF_C4 10..80 CDD:197701 27/88 (31%)
Hormone_recep 177..384 CDD:278530 47/249 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165564
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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