DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-134

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503610.1 Gene:nhr-134 / 185728 WormBaseID:WBGene00003724 Length:407 Species:Caenorhabditis elegans


Alignment Length:454 Identity:110/454 - (24%)
Similarity:180/454 - (39%) Gaps:108/454 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 PAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRA----CEMDMYMRRK 315
            |||......|.:||.:.||.|:..::|..|..||||:.|.|.:    |||.    |::....:.|
 Worm     2 PAPLFLSGPCEICGQKTSGRHFGVMSCRSCAAFFRRAATCSRI----FGRCPNGNCKLLENGKFK 62

  Fly   316 CQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQD--- 377
            |::||:|:||.|||               .|.|.|..:|.:::|...|.  ..||.....|.   
 Worm    63 CKKCRMKRCLEVGM---------------DETKFQCNRDLISSSNKFQK--RVSLIEPPPQSLST 110

  Fly   378 FVKKEILDLMTCEPPQHATIPLLPD---------EILAKCQARNIPSLTYNQLAVIYKLIWYQDG 433
            |:.:..| |:.|||.:.:.|..|.:         :||.:..:..||...:|.|..:         
 Worm   111 FLGRPTL-LLCCEPTRASHIKTLINVTYMVDVARDILKRDVSTKIPYQFHNSLERL--------- 165

  Fly   434 YEQPSEEDLRRIMSQPDENESQTDVSFRHI--TEITILTVQLI---VEFAKGLPAFTKIPQEDQI 493
              ..|.|::|  ..:|||....    .|.|  .|..::..|..   ||:......|..:.:..::
 Worm   166 --ALSLEEIR--SREPDEKIKM----LRKIGQEESLLIWEQAFLRAVEWFSNFSEFNALDELSKM 222

  Fly   494 TLLK-ACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVD 557
            |:|| |..|...:.::|...||....||        .||..|.|     .|.   |..:.:.:||
 Worm   223 TILKSAWISWTRLEKLAETADHQRKKIF--------GDSVMMCG-----NDA---CLDLANYEVD 271

  Fly   558 ---NVEYALLTAIVIFSDRPGLEK---AQLVEAIQ--------SYYIDTLRIYILNRHCGDSMSL 608
               ...|.  |..::|...|.:|:   ..|.|.::        ||.:..:.:::..:..      
 Worm   272 LTWCTNYT--TEQLLFYLSPEIEQNHFLSLQELVELNPTSTELSYMLLQITLHLAGKKA------ 328

  Fly   609 VFYAKLLSILTE--LRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHLQITQEEN 670
              ..:||.| ||  |...||...|    ..:|..|:|.::..:..:..|...::|.::...|:|
 Worm   329 --QGQLLEI-TEMLLEAQGNHLHE----YYVKKLKMPNYVMRLAKLMKINRRIESDMRDRVEKN 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 30/93 (32%)
NR_LBD_EcR 420..652 CDD:132736 53/253 (21%)
nhr-134NP_503610.1 ZnF_C4 10..78 CDD:197701 28/86 (33%)
Hormone_recep 177..384 CDD:278530 51/241 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165629
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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