DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-183

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503621.1 Gene:nhr-183 / 185594 WormBaseID:WBGene00018266 Length:394 Species:Caenorhabditis elegans


Alignment Length:428 Identity:82/428 - (19%)
Similarity:151/428 - (35%) Gaps:122/428 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSV---TKSAVYCCKFGRACEMDMYMRRKCQECRLKKCL 325
            |.:|...|.|.|:..::|..|..|:||:.   .|..:..|......:||......|:.|||||||
 Worm     4 CQICEQPAHGQHFGVVSCRACAAFYRRATLNPKKKILPNCIHEDGKKMDENGVFSCRRCRLKKCL 68

  Fly   326 AVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCE 390
            ..||               ...|.|.|:|.:::|.|............|..:|       |:.|.
 Worm    69 KKGM---------------DASKFQLERDLISSSLSMAEIPQTLSTFLGRPNF-------LLFCN 111

  Fly   391 PPQHATIPLLPDEILAKCQARNIPSLT-----YNQLAVIYKLIWYQDGYEQPSEEDLRRI--MSQ 448
            |.:.:|            .|:.:...:     .|:|        .::|...|...::..:  |:.
 Worm   112 PLEPST------------TAKTVVDFSCLLERANEL--------LKNGRWNPYNSEISSLEKMAM 156

  Fly   449 PDENESQTDVS-FRHITEI----TIL--------TVQLIVEFAKGLPAFTKIPQEDQITLLKAC- 499
            ..||......| .||::.:    |||        |...:..|.:    |..:|.:.|:.::|.. 
 Worm   157 RYENMQIIKSSRLRHLSRMGKDETILIWEQKILNTTDWLTNFNE----FNVLPLDVQLKIVKTIW 217

  Fly   500 --------SSEVMMLRMARRYDHSSDSIFFANNRS-------------YTRDSY-KMAGMADNIE 542
                    .::...||..:..:|  |::|...:.:             ||..|: ::|...|...
 Worm   218 QVYGRFEKIAKTAELRRKKLIEH--DNVFMVGDEACLNSKNVEMDVSWYTDYSFEQIAYFMDCFH 280

  Fly   543 D--LLHFCRQMFSMKVDNVE--YALLTAIVIFSDRP--GLEKAQLVEAIQSYYIDTLRIYILNRH 601
            |  .|...::..::....:|  :.||...:..:.:.  | :..:|.:.:|....:.|..:.||  
 Worm   281 DDIYLQIVKEFETLNPTPIELNFMLLQVCLHHAGKKLHG-DMLELTDYLQEVISNQLHNHYLN-- 342

  Fly   602 CGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKN 639
                               :|.:.|.:|.:...:|:.|
 Worm   343 -------------------VRKMPNYSARLARMMKVNN 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 25/89 (28%)
NR_LBD_EcR 420..652 CDD:132736 44/264 (17%)
nhr-183NP_503621.1 ZnF_C4 3..75 CDD:197701 24/85 (28%)
Hormone_recep 165..373 CDD:278530 38/225 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165478
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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