DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-118

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001317747.1 Gene:nhr-118 / 184398 WormBaseID:WBGene00003708 Length:363 Species:Caenorhabditis elegans


Alignment Length:422 Identity:97/422 - (22%)
Similarity:156/422 - (36%) Gaps:92/422 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 KKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMR 313
            ::||....|:.....||||||.....||..::|.|||||||||:.:...|.|.|...|.::...|
 Worm     2 EQSKMNVKPQPLVSACLVCGDPNIQRHYGTVSCNGCKGFFRRSIWEKRTYKCSFHNQCSIEHKYR 66

  Fly   314 RKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDF 378
            .:|:.|||:||...||....:      ..||.::|:|.|      ||.::.              
 Worm    67 NRCRACRLEKCFRAGMDASAI------RNKRAKRKSQPE------SPCTEE-------------- 105

  Fly   379 VKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLR 443
            ::...|...|             :.|:|....:|  ..|:|:|:                     
 Worm   106 IENRALSWQT-------------EAIIALLMQKN--GQTHNKLS--------------------- 134

  Fly   444 RIMSQPDENESQTDVSFRHITEITILTVQL-------IVEFAKGLPAFTKIPQEDQITLLKACSS 501
                   :....::.:|...:.:|:.|:.|       .:.....||.:..:...|:..|:.....
 Worm   135 -------QFSGASEFNFSTRSFVTLETLHLNRHQLPNRIWLENTLPEYQMLVHADKNVLMSLSIL 192

  Fly   502 EVMMLRMA-RRYDHSSDSIFFANNRSYTRDSYKMAGMADN-------IEDLLHFCRQMF----SM 554
            .|..|..| ..|....|.|.||:...:.||....:.:...       ..||  |..|:.    .:
 Worm   193 SVCWLTSAFESYKFECDGILFADGSWFPRDRKLRSQVCSRCVTYFGCTVDL--FLTQVVYRIKEL 255

  Fly   555 KVDNVEYALLTAIVIFSDRPGLEK--AQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSI 617
            |:|..|..||.||......|.|.:  .::|...|:.|...|..||.:...|...:.:...|:|.|
 Worm   256 KIDETEITLLKAICHLQPSPQLSRHAIEIVANGQTKYKKVLCEYIRSNTDGYMDASIRLCKILQI 320

  Fly   618 LTELRTLGNQNAEMCFSLKLKNRKLPKFLEEI 649
            |.||..|.....:....:.|...:|....:|:
 Worm   321 LPELDALAKLEEDNGLLVSLSGIELNAARQEV 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 34/89 (38%)
NR_LBD_EcR 420..652 CDD:132736 49/251 (20%)
nhr-118NP_001317747.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165561
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAC4
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1137281at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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