DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-166

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_494682.1 Gene:nhr-166 / 183605 WormBaseID:WBGene00016772 Length:363 Species:Caenorhabditis elegans


Alignment Length:409 Identity:104/409 - (25%)
Similarity:162/409 - (39%) Gaps:98/409 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRAC-EMDMYMRRKCQECRLKKCLAV 327
            |.:|.:::||.||..|:|:.||.||:|:......|.|:...:| .|| ...|||:.||.||||.|
 Worm    11 CAICRNKSSGCHYGVLSCDACKMFFKRTYLMEKYYTCRRQESCYNMD-GGNRKCKACRFKKCLEV 74

  Fly   328 GMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPP 392
            ||.||..              ::.|...::|:..:|      |.:   ||....|.|..:     
 Worm    75 GMNPELF--------------SRSESQIISTNIPTQ------LIT---QDHRNAEFLQKL----- 111

  Fly   393 QHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTD 457
                      :||.|.:..            ::|:|   |.||.||..||.|..|:........:
 Worm   112 ----------KILDKTRHE------------VFKII---DTYENPSFVDLVRQESRLSCYLRPKN 151

  Fly   458 VSFRHITEITI-----LTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMA-RRYDHSS 516
            :|:.: ||..:     |.:.|.||..|.|..:.|:...|:|.||:..:.:...|.:| ..:....
 Worm   152 ISWEN-TERKLKPWGSLGMLLAVETIKSLDFYPKLLLSDRILLLETVTLKSFHLSVAFDSFSQKK 215

  Fly   517 DSIFFANNRSYTRDSY-KMAGMADNIEDLLHF-CRQMFSMKVDNVEYALLTAIVIFSDRPGLEKA 579
            :.|...:......||. ||....|.|..||.. .:.:.:||:...||.||..|||.:..      
 Worm   216 EKILAPDGSEMFPDSLNKMDFCKDLIMRLLTTPVKPLIAMKLTETEYLLLGIIVICNPE------ 274

  Fly   580 QLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNA------EMCFSLKLK 638
                      ||.|      ...|.::...|..|.:::|.:...:.|..:      |:....::.
 Worm   275 ----------IDGL------SPSGKAIITAFLQKTINVLLQFCLINNPRSAPSRLLEIISINQIL 323

  Fly   639 NR------KLPKFLEEIWD 651
            ||      ||...|.:.||
 Worm   324 NRQFHASYKLFDALRKQWD 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 32/87 (37%)
NR_LBD_EcR 420..652 CDD:132736 61/252 (24%)
nhr-166NP_494682.1 NR_DBD_HNF4A 11..86 CDD:143518 32/89 (36%)
HOLI 165..326 CDD:214658 41/182 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165522
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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