DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-139

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_504767.1 Gene:nhr-139 / 183179 WormBaseID:WBGene00016365 Length:346 Species:Caenorhabditis elegans


Alignment Length:416 Identity:81/416 - (19%)
Similarity:148/416 - (35%) Gaps:117/416 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSV--TKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLA 326
            |.|||...:..|:...:|..|..||||.|  .|..:.|     .|...:.....|:.||::||:|
 Worm     3 CKVCGANGAEAHFGGESCRACAAFFRRYVHSQKLVIEC-----TCLHRLPSSHPCRHCRMEKCIA 62

  Fly   327 VGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEP 391
            .|| ..|.|..|            :||:|:          .|..                    |
 Worm    63 TGM-TMCKVQGN------------REKNKV----------RGYY--------------------P 84

  Fly   392 PQHATIPLLPDEILAK-CQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQ 455
            .....|..||..::.| |.  ||.....|         |.          ||.:...|. ..|:.
 Worm    85 GYLPVISTLPTSVIPKSCD--NILRTVAN---------WV----------DLDQTRKQL-RGENF 127

  Fly   456 TDVSFRHITEITILTVQLIVEFAKGL-PAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSI 519
            .|.:...:|:::.:..:|:.:..:.: ...:|....|:.:::.....:.:::..|..|..:.:..
 Worm   128 FDHNLTQVTKLSKMDSKLLWDLGEVIFSDVSKFNSFDKDSMIANFFPKWIIMECAIDYSLNQEQF 192

  Fly   520 --FFANNRSYTRDSY---------KMAGMADNIEDLLHF--------CRQMFSMKVDNVEYALLT 565
              |..:...|.:.::         |.....|.|:....|        ...:|..|.|.:||..:.
 Worm   193 QSFIGSIEYYKKCAHFYGSSMPEEKRLDDEDTIKIFSKFWDWHYSEIAHPIFLKKFDKIEYMAIF 257

  Fly   566 AIVIF-------SDRPGLEKAQLVEAIQSYYIDTLRIYILNRHCG--------DSMSLVFYA--K 613
            .:::|       ||    :..:|.:.|:...:..|:.|..:::|.        |::.|:..|  |
 Worm   258 LLLLFDSAYMNISD----DGVKLCQNIRKVILRELQGYQSDKNCSRYRLAETVDTVRLLEKAEGK 318

  Fly   614 LL--SILTELRTLG-NQNAEMCFSLK 636
            |.  |:|.|...|. :::.:..|.:|
 Worm   319 LQEESVLCEFHNLEIDEDHKKIFQIK 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 26/88 (30%)
NR_LBD_EcR 420..652 CDD:132736 42/257 (16%)
nhr-139NP_504767.1 ZnF_C4 3..66 CDD:197701 23/68 (34%)
HOLI 154..315 CDD:214658 25/164 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165537
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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