DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-150

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_506854.1 Gene:nhr-150 / 182297 WormBaseID:WBGene00007367 Length:342 Species:Caenorhabditis elegans


Alignment Length:431 Identity:79/431 - (18%)
Similarity:148/431 - (34%) Gaps:156/431 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 LCLVCGDRASGYHYNALTCEGCKGFFRR-SVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLA 326
            :|.|||...:..|:..::|..|..|||| .::|.....|    .|:..:.....|:.||:.||..
 Worm     1 MCQVCGAAEADLHFGGISCRACAAFFRRFFLSKKQSKKC----TCKTRILDSHPCRSCRILKCFE 61

  Fly   327 VGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEP 391
            .||               ..||.|..:||.:|.                          .::|..
 Worm    62 AGM---------------TSKKIQSGRDKTSTK--------------------------AISCIS 85

  Fly   392 PQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRR---IMSQPDENE 453
            .:..:..|         .||.||..:.|....::  :|.:....:..::..:|   |:|.....:
 Worm    86 TESTSNSL---------SARIIPRSSLNIHGAVH--LWQEFENTRACKKGTKRNALIVSTSSAGD 139

  Fly   454 SQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDS 518
            ..:             |.::::.....|   .::..:|:..||:....:.:.:          ||
 Worm   140 MDS-------------TWKMVINLFSSL---GELEIKDKTALLRNFMPKFIQI----------DS 178

  Fly   519 I-FFANN----RSYTRDSYK--MAGMADNI---------EDLLHFCRQMFS------------MK 555
            : :||.|    ::..||.|:  :....|.:         :|.:......::            ||
 Worm   179 VPYFAANIDVFKNIGRDEYESSIIDFYDGVLPETNTISKKDTIRIFEPYWNFYTNKVILPIALMK 243

  Fly   556 VDNVEYALLTAIVIF-------SDR-----PGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSL 608
            ::..|:..|..::.|       ||:     ..::|..|.| ::||.||  |.:..||        
 Worm   244 LEGPEFMALVWLLFFDNGYTNLSDKCREACRNIKKVILRE-LRSYQID--RNFDRNR-------- 297

  Fly   609 VFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEI 649
             |:                  |:..:|:|..|...||:||:
 Worm   298 -FF------------------EILEALQLVERGEKKFMEEM 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 23/88 (26%)
NR_LBD_EcR 420..652 CDD:132736 45/273 (16%)
nhr-150NP_506854.1 ZnF_C4 2..65 CDD:197701 21/81 (26%)
HOLI 139..310 CDD:214658 36/226 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165532
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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