DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-79

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_507734.4 Gene:nhr-79 / 180265 WormBaseID:WBGene00003669 Length:463 Species:Caenorhabditis elegans


Alignment Length:396 Identity:90/396 - (22%)
Similarity:146/396 - (36%) Gaps:112/396 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVC-GDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFG---RACEMDMYMRRKCQECRLKKC 324
            |:|| ...|:.||:.|.:|:.|..|||||:.....|.| .|   .:|::|..:|..|:.||||||
 Worm     6 CMVCDSPNATNYHFGAQSCKACAAFFRRSIAMDQCYEC-LGDGVHSCKIDHTLRLNCRHCRLKKC 69

  Fly   325 LAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTS--------PSSQHGGNGSL------ASGGG 375
            ...||..:.|       ..:||.|:.|.|:...:|        |..|.|.:...      ||...
 Worm    70 QKAGMMRDLV-------QAKREIKSDKGKNSRNSSQSEDFFSPPPEQPGPSNYFDQFPWQASENE 127

  Fly   376 QD------FVKKEILDLMTC-EPPQHATIPL----LP------DEILAKCQARNIPSLTYN---- 419
            .|      .::|...:||.. |..|...||.    .|      |||.::..:.:..|....    
 Worm   128 MDPYPSSPKIRKMSENLMGIDELQQFIQIPAGVDDFPDIFTDSDEIRSRMTSISEASAYVTGMEE 192

  Fly   420 -----QLAVIY----------KLIWYQD--------------------------GYEQPSEEDLR 443
                 .||.:|          :.|.|.|                          .|.|.:..|..
 Worm   193 EERLFGLAGLYTEQVINLNMRRRITYTDRLLGSVFDAPCVCPYDKADLKLFDHRTYRQKNRNDYT 257

  Fly   444 RIMSQPDE-------NESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKI--PQEDQITLLKAC 499
            .|:...:.       ::|:..|.||....:.:|..|         ..::::  |.||   :|...
 Worm   258 MILDYINRFPEFESLSKSEKTVLFRTAAAVDVLLDQ---------SYYSQVIFPTED---VLVTA 310

  Fly   500 SSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALL 564
            :.|.:.:....:.::..||..|.::..|  |.:||. .:..:...||.|..|..:.:...|::|.
 Worm   311 NGEYLPMNPMPKVENQRDSGNFHSDEDY--DRFKML-TSMKVRQWLHVCEPMKKLDMSLAEFSLF 372

  Fly   565 TAIVIF 570
            .|:.|:
 Worm   373 KALTIW 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 33/90 (37%)
NR_LBD_EcR 420..652 CDD:132736 36/196 (18%)
nhr-79NP_507734.4 ZnF_C4 5..77 CDD:197701 29/71 (41%)
HOLI 253..429 CDD:214658 28/141 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165566
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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