DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-53

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_741644.1 Gene:nhr-53 / 180053 WormBaseID:WBGene00003643 Length:364 Species:Caenorhabditis elegans


Alignment Length:464 Identity:103/464 - (22%)
Similarity:180/464 - (38%) Gaps:151/464 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   232 SPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSA 296
            ||:..||.:.::       |.:||     ...||:|.:.|.|:|:.|..|..|..||||:|..:.
 Worm     3 SPTHLLNNFESS-------SSQGP-----PSYCLICCEVADGHHFGAAACRACAAFFRRTVQLNK 55

  Fly   297 VYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPS 361
            |:.|.....|.:...:|..|:.||.:|||.|||:...|               |:::|::     
 Worm    56 VHDCPKNGQCFILSNVRNMCRACRYEKCLEVGMQRSSV---------------QQKRDQL----- 100

  Fly   362 SQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAK----CQARNIP-SLTYNQL 421
               |....|.:..     ::.:||.|     :.|...||   ::.|    .|...:| ::::|:|
 Worm   101 ---GRRDGLPTNR-----EEPVLDTM-----RRAYEKLL---VVRKKVHNRQENQLPRAISFNEL 149

  Fly   422 AVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTK 486
            .|:|                         :||         :|.|.....:...|:::.||. ||
 Worm   150 QVVY-------------------------QNE---------MTVIYQFLCEAFPEYSELLPD-TK 179

  Fly   487 --------IPQEDQITLLKAC-------SSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAG 536
                    :|    .|||::.       ...||::       .|.|.:..|:..||..:::....
 Worm   180 RSLFKNFFLP----FTLLESSYYGYLTKQENVMLI-------PSGDYVDLAHLESYFNNNHHTFS 233

  Fly   537 MADNIEDLLHFCRQMFSM------------KVDNVEYALLTAIVIF-------SDRPGLEKAQLV 582
            ..|.|.    ...|.|.|            .||..|:..|.||:::       :||..:::..: 
 Worm   234 QKDTIS----MFAQQFRMLHTSITVPLSAENVDVNEFLALAAIILWESDLEVEADRKNVQEEAV- 293

  Fly   583 EAIQSYYIDTLRIYI--LNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKN----RK 641
             .|:|..|..|..:.  :|.:...:|.|   ..:||||..::...::..|.   :::||    ..
 Worm   294 -KIKSAIIKDLLFHYQSINVYADVAMRL---GAVLSILPSIQRASHRFHEY---MEIKNLLNLYA 351

  Fly   642 LPKFLEEIW 650
            |||.|.:::
 Worm   352 LPKNLYDMF 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 28/89 (31%)
NR_LBD_EcR 420..652 CDD:132736 54/271 (20%)
nhr-53NP_741644.1 NR_DBD_like 23..98 CDD:295381 29/89 (33%)
Hormone_recep 134..340 CDD:278530 50/260 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165588
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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