DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-12

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001122983.1 Gene:nhr-12 / 179403 WormBaseID:WBGene00003611 Length:456 Species:Caenorhabditis elegans


Alignment Length:449 Identity:113/449 - (25%)
Similarity:181/449 - (40%) Gaps:91/449 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 RVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLK 322
            |.::..|.||.:...|.|:.|..|..|..||||||..|..|.|:.||.||:...:|..|:.||..
 Worm    41 RYEKPNCAVCNEVGDGLHFGAEACRACTAFFRRSVALSKKYECRAGRNCEVSSNIRCMCRSCRYD 105

  Fly   323 KCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLM 387
            ||:.|||.||||       ..|||....|...:..||.:.                :::.|.:..
 Worm   106 KCIEVGMNPECV-------QNRRENDTPKADLQFDTSKTE----------------IRRPIPNFN 147

  Fly   388 TCEPPQHATIP---------LLPDEILAKCQA---RNIPSLTYN-QLAVIYKLIWYQDGYEQPSE 439
            ..  ||.:.:|         :..|..::...|   .::|.|:.: .|..:..|...:..|::  .
 Worm   148 IV--PQASAVPSTSNFMDFSIFKDTPISNFSAFSPASLPGLSSSPSLETMPLLERMRINYDK--M 208

  Fly   440 EDLRRIMSQPD-ENESQTDV----SFRHITEITILTVQLIVEFAKG-LPAFTKIPQEDQITLLKA 498
            |:.|.::.:.: ||..|..|    :||..||:|...|.|:.::.:. ...|..:| .||.|:|..
 Worm   209 ENARNVIHRREGENIFQQKVPRAITFREATEVTTKEVSLVADWIEWCFDDFGLLP-VDQKTILFQ 272

  Fly   499 ------CSSE--VMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMK 555
                  |..|  .|.::..|      |.|....::.|.  .|      ||:|.....|..  ...
 Worm   273 NFFVFFCMLERAFMTVKSGR------DGIVVMASKDYI--DY------DNLEGFFKECNS--GTG 321

  Fly   556 VDNVEYALLTAIVIFSDRPG--LEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSIL 618
            ....|.|.|..::    ||.  |:|..|:..::...:|:...:.|   |   :.|.:...|....
 Worm   322 GTPAEIAKLCRLI----RPSFELQKRSLINLMRLENVDSYEFFAL---C---VMLFWDFGLEGQS 376

  Fly   619 TELRTLGNQ-----NAEMCFSLK-LKNRKLPKFLEEIWDVHAIPPSVQSHLQITQEENE 671
            .|...:|.:     ..||.|.|: :|..:.|  |..:..|.:|.||:|..::..||:.|
 Worm   377 DECNEVGRRVKHRVTREMTFYLRNVKKHEEP--LYRMASVVSILPSLQRAVRRFQEDIE 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 37/89 (42%)
NR_LBD_EcR 420..652 CDD:132736 56/253 (22%)
nhr-12NP_001122983.1 ZnF_C4 46..115 CDD:197701 30/68 (44%)
Hormone_recep 225..431 CDD:278530 55/234 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165624
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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