DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-44

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_505313.1 Gene:nhr-44 / 179276 WormBaseID:WBGene00003634 Length:428 Species:Caenorhabditis elegans


Alignment Length:498 Identity:104/498 - (20%)
Similarity:174/498 - (34%) Gaps:145/498 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 VNSISSGRDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCK 285
            ::|||      |||:|              |.....|::..|.||||...:.|.|:...:|..|.
 Worm     1 MDSIS------SPSTS--------------SSASSTPKLISEKCLVCFQPSHGNHFGVDSCRACA 45

  Fly   286 GFFRR-SVTKSAVYCCKFG-RACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKK 348
            .|||| .||....:.|:.| ..|..|.:.|..|:.||..||.|:||:|:.:              
 Worm    46 AFFRRVFVTHKQQFPCREGDNKCTPDEWGRWSCKRCRSDKCFALGMKPDNI-------------- 96

  Fly   349 AQKEKDKMTTSPS----SQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKCQ 409
             |:::|:...|.:    .:...:.|:.....:.||.|:::...|                 :...
 Worm    97 -QRDRDRFIFSDNFRDDRKRKTSESIVPLSVERFVGKQLVTTYT-----------------STGS 143

  Fly   410 ARNIPSLTYNQLAVIYKLIWYQDGY---EQPSEEDLRRIMSQPDE-----NESQTDVSFRHITEI 466
            .:||..:|:..|..|.|    ...|   ..|..|...::.|..::     .|.:.:..|..:.|:
 Worm   144 GKNIEYITFFDLTPIIK----DADYILKRIPKLEKSVKVKSSLEQLAFGLQEVRKEQLFESVPEL 204

  Fly   467 -TILTVQLIVEFAKGL----------PAFTKIPQEDQITLLKACS-------SEVMMLRMARRYD 513
             .|..::....:.||:          ..|.::.||:::.:|| |.       ..:.|....||..
 Worm   205 RKIGKMETWDNWVKGMRRAGEWIMHFEEFRQLEQEEKMVILK-CMWHLFIRLERISMTAEMRRMK 268

  Fly   514 HSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVD--------------------- 557
            ...|..|......  |.:|          |.|...|..||...|                     
 Worm   269 LCDDKEFIYGTEQ--RINY----------DTLEIDRDWFSEATDREVRSFIGPLPRWFCETIIDA 321

  Fly   558 -------NVEYALLTAIVIF---SDRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFY- 611
                   :||.:.:...:.|   ..:.|....::.:.:|....:.|..|.|.:   |..|...| 
 Worm   322 LMELRPSDVELSFMLCNLCFHLTGQKLGGRIQEITDRLQDVLANDLHKYYLAK---DKYSRYSYR 383

  Fly   612 -AKLLSIL------TELRTLG--NQNAEMCFSLKLKNRKLPKF 645
             .||||:.      .|:|..|  ..|....|.:||.:.::.:|
 Worm   384 LTKLLSLNRQYKNDLEIRRQGIFLANTLNIFRVKLSHPEMFQF 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 29/91 (32%)
NR_LBD_EcR 420..652 CDD:132736 55/293 (19%)
nhr-44NP_505313.1 ZnF_C4 23..94 CDD:197701 27/70 (39%)
Hormone_recep 198..403 CDD:278530 41/220 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165495
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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