DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-115

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001256014.1 Gene:nhr-115 / 178708 WormBaseID:WBGene00003705 Length:391 Species:Caenorhabditis elegans


Alignment Length:440 Identity:88/440 - (20%)
Similarity:149/440 - (33%) Gaps:138/440 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGR-ACEMDMYMRRK--CQECRLKKCL 325
            |.:||..:.|.|:..::|..|..||||||..      |:.| .|..:...:..  |:.|||:||:
 Worm     8 CQICGQNSHGTHFGIVSCRACAAFFRRSVNS------KWARKGCLTNFKDKGSCFCKPCRLRKCV 66

  Fly   326 AVGMRPECVVPENQCAMKRREKKAQKEKD--------KMTTSPSSQHGGNGSLASGGGQDFVKKE 382
            .:||               ...|.|.::|        |:..|.|...|....|.........:|.
 Worm    67 EIGM---------------DASKFQYDRDAISAIKHPKIFPSVSYYVGRPEFLMFSDSNVTSQKT 116

  Fly   383 ILDLMT------------CEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYE 435
            .:|:..            ||.|           |.|:.|.:.: :|.:..:...|:.:.:.|...
 Worm   117 FIDVQNLVFEVSRYLDHGCETP-----------IYAENQLKKL-TLGFKLMQFDYQNVKFFDKIG 169

  Fly   436 QPSEEDLRRIMSQPDENESQTDVSFRHITEITILTV-QLIVEFAKGLPAFTKIPQEDQITLLKAC 499
            :                     ..|..|.|...||| :.|..|.:    |.|:.|..||.||:| 
 Worm   170 K---------------------AEFIDIIEYYFLTVAKWIAHFDE----FRKLDQSLQIKLLQA- 208

  Fly   500 SSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALL 564
                 :..:..:....:.:.|:..:....:.:.|:         |.:.|  |..|.|..::.:.:
 Worm   209 -----IWHVWSKIHKCASTAFYRKSNPNAKPTQKI---------LRNVC--MDRMHVHKLDTSWM 257

  Fly   565 TAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNA 629
                  ||.|               .:.:..::|..|..|...:....||.....||..:   .|
 Worm   258 ------SDYP---------------TEHVTRFMLTHHVYDFKIVESLLKLDPTDVELTFM---FA 298

  Fly   630 EMCFSLKLKN-----RKLPKFLEEIW--DVHAIPPSVQSHLQITQEENER 672
            ::||....|.     .|:....:::.  |:|        |..||.:..||
 Worm   299 QLCFEYAGKRFQGEILKITDHFQQVLSNDLH--------HYYITDQRRER 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 25/89 (28%)
NR_LBD_EcR 420..652 CDD:132736 40/239 (17%)
nhr-115NP_001256014.1 ZnF_C4 7..73 CDD:197701 24/85 (28%)
Hormone_recep 160..359 CDD:459675 46/255 (18%)

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