DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-56

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001033487.1 Gene:nhr-56 / 178699 WormBaseID:WBGene00003646 Length:408 Species:Caenorhabditis elegans


Alignment Length:465 Identity:97/465 - (20%)
Similarity:178/465 - (38%) Gaps:133/465 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKC 324
            ::.||.:||:.|.|.|:..|:|..|..||||:......: |..|. |::|.:.:..|::|||:.|
 Worm     6 RKSLCKICGNPAFGNHFGVLSCRACAAFFRRTNVDGETF-CPIGN-CKIDKHGKFYCKKCRLRIC 68

  Fly   325 LAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILD---- 385
            |..||               ...|.|.::|.::||.|.....:||. |...:..|.|.:.:    
 Worm    69 LEAGM---------------DANKFQHDRDLISTSTSESSDSSGSF-SFSQRSKVPKSMANFLGR 117

  Fly   386 ---LMTCEPPQHATIPLLPDEILAKCQARNIPSLTY--NQLAVIYKLIWYQDGYEQPSEEDLRRI 445
               :::|||.:.:.:             :.|..:|:  ||...|:..:   |.....|..:|.|:
 Worm   118 PAFILSCEPDKASKV-------------KTIVDVTFLINQAFDIFGNV---DRKRFSSNSNLGRM 166

  Fly   446 MSQPD--ENESQTDVS---FRHITEITILTVQLIVEFAKGL---PAFTKIPQEDQITLLKACSSE 502
            ..:.:  :||..:::|   ...:.|..|...|..:..|:.|   ..|.::|...::.:||.  :.
 Worm   167 TKKFEDLQNEKSSNLSTIKVLGLKESMIFWEQDFLRTARWLSHFDEFQELPLSIRMQILKV--AW 229

  Fly   503 VMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAI 567
            ::..|:.:....:::    ..|:...::.| |.|....|:             :.|.|       
 Worm   230 ILWGRLDKLVKTANE----RKNQQLNQNFY-MIGKDVGID-------------IGNFE------- 269

  Fly   568 VIFSDRPGLEKAQLVEAIQSYYID----------------------TLRIYIL--------NRHC 602
            |..|......|.||     :||:|                      .|...:|        .:|.
 Worm   270 VDVSWCTNYSKEQL-----AYYLDCHHDEPFNIIVDAISDLKPSDMELNFMLLELCLAHAGKQHQ 329

  Fly   603 GDSMSLVFYAKLLSILT-------ELRTLGNQNAEMCFSLKLKN---RKLPKFLE--------EI 649
            ||  .|:|..:||.:::       :...:.|.::.:...:|:.|   |.|.:.||        .|
 Worm   330 GD--VLMFTDRLLEVVSNELHDYYQSEQISNYSSRITKMMKINNLIRRNLFERLERQAVAKVFNI 392

  Fly   650 WDVHAIPPSV 659
            ..||...|.:
 Worm   393 ISVHFSHPDM 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 27/89 (30%)
NR_LBD_EcR 420..652 CDD:132736 51/287 (18%)
nhr-56NP_001033487.1 ZnF_C4 9..76 CDD:197701 26/83 (31%)
Hormone_recep 177..390 CDD:365875 42/246 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165479
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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