DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-86

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503561.2 Gene:nhr-86 / 178685 WormBaseID:WBGene00003676 Length:407 Species:Caenorhabditis elegans


Alignment Length:474 Identity:101/474 - (21%)
Similarity:171/474 - (36%) Gaps:136/474 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 LNGYSANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCK 301
            |:..|..|| ..:..||      ::..|.:|.:...|||:.|..|..|..||||||:....|.|:
 Worm     4 LDNTSLEES-QFRPEKK------EKSTCSICREDGDGYHFGAEACRACAAFFRRSVSLDKTYLCR 61

  Fly   302 FGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGG 366
            ....||:...:|..|:.||..|||.|||.|..|       .:||:...::|              
 Worm    62 GNNDCEITANIRCMCRSCRFAKCLEVGMNPAGV-------QQRRDTIGKRE-------------- 105

  Fly   367 NGSLASGGGQDFVKKEILDLMTC-------EPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVI 424
                        :|.:..|||..       .||..:....|.:::......| :|.|.  ::.|.
 Worm   106 ------------IKPDSTDLMQLLGSVGDGYPPTTSAQSALVEDLHPSFNDR-MPILM--KMRVN 155

  Fly   425 YKLIWYQDGYEQPSEEDLRRIMSQPD-----ENESQTDVSFRHITEITILTVQLIVEF-AKGLPA 483
            |:.:           ::.|.::.:.|     :.::...|:::.....:|..|.|:.:: |.....
 Worm   156 YRKM-----------DNARLVIHRKDGQSLFKEKTPKAVNYKEACAQSIREVSLVADWVAWCFDD 209

  Fly   484 FTKIPQEDQITLLK-------------AC----SSEVMMLRMARRYDHSSDSIFFANNRSYTRDS 531
            |..:|.:.:..|.:             .|    :|..::|       .|.|.|...|.:|:....
 Worm   210 FVTLPMDQKKVLFRNFYTPFSVLEGAFLCHINDTSNALIL-------PSGDYIDTNNLKSFFNIP 267

  Fly   532 YKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIY 596
            .:...|.|  :::..||| ||....:             .:|.||....:.|.|..:....|..:
 Worm   268 DEEQPMTD--DEIEKFCR-MFKPSFE-------------LNRRGLVLPMMAEKIDVFEFFALCTF 316

  Fly   597 I-----LNRHCGDSM------------SLVFYAKLLSILTE--LRTLGNQNAEMCFSLKLKNRKL 642
            :     |:....|.|            .|.||.:....|.|  ||.     |.:...|....|.:
 Worm   317 VFWDFGLDEQTDDCMMIGKSVKDRVMKELAFYLRCAKRLEEPSLRV-----ASLLTLLPALQRCV 376

  Fly   643 PKFLEEI-----WDVHAIP 656
            .:|.|:|     ::|:|.|
 Worm   377 RRFQEDIEITNVFNVYAPP 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 32/89 (36%)
NR_LBD_EcR 420..652 CDD:132736 49/278 (18%)
nhr-86NP_503561.2 ZnF_C4 23..91 CDD:197701 28/67 (42%)
NR_LBD 187..375 CDD:132726 40/215 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165573
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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