DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-110

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001041195.1 Gene:nhr-110 / 178651 WormBaseID:WBGene00003700 Length:424 Species:Caenorhabditis elegans


Alignment Length:485 Identity:97/485 - (20%)
Similarity:160/485 - (32%) Gaps:189/485 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFR-RSVTKS-------AVYCCKFGRACEMDMYMRRKCQECR 320
            |.||.....|.|:.|.||..|..||| .|::||       ..:.|:....|:..:..|..|:.||
 Worm    26 CQVCFLPGHGIHFGAYTCRACAAFFRIVSISKSKCHFSPRPTHKCRNNSNCKPKIDGRWFCKTCR 90

  Fly   321 LKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDK----MTTSPSSQH----------------- 364
            |.:||::||.||.:               |.::||    :.:|.:::|                 
 Worm    91 LTRCLSIGMSPENI---------------QYDRDKFESILKSSKNNRHLQIPNTVESQLCISPLV 140

  Fly   365 -GGNGSLASGGGQD---FVKKEILDLMTCEPPQHATIPLLPD--------EILAKCQARNIPSLT 417
             ..|....|....|   .|||.:..|:  .|.....|....:        :.|...|..|||.:.
 Worm   141 SFSNRREKSSKCIDISQIVKKAVAKLL--NPAMIRNIDSTSNLEQLTSGFKNLQSGQKENIPKID 203

  Fly   418 YNQLA---------VIYKLIW--YQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTV 471
            :..||         :....:|  |.|.::..|  |:::|               :.:..|..:..
 Worm   204 HITLAHQTQHFNSSMCSAAVWLGYSDRFKTYS--DMQKI---------------KVLQAIWCIWG 251

  Fly   472 QL--IVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRD---S 531
            :|  ||..||             :.::..|..|...|        :||::...:|.|...|   :
 Worm   252 RLEGIVMTAK-------------MRIIGKCEKEQFFL--------TSDTLIVYDNFSSDLDYCST 295

  Fly   532 YKMAGMADNIEDLLHFC--RQMF---------SMKVDNVEYALLTAIV---IFSDRPG------L 576
            |.       .|::.:|.  |:||         .::.|:||...|.::|   :...|.|      :
 Worm   296 YP-------FEEMKYFFIPREMFHEDVISELVKVQPDDVETTYLMSVVCLQLTGKRYGGLIQEEM 353

  Fly   577 EKAQ--LVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKN 639
            |:.|  |...:..|||                                                |
 Worm   354 EQFQDILSNDLHEYYI------------------------------------------------N 370

  Fly   640 RKLPKFLEEIWDVHAIPPSVQSHLQITQEE 669
            .|:||:|..|..:..:......:|.|..|:
 Worm   371 NKMPKYLLRIKQLMRVKEMFLRNLNIRMEK 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 28/94 (30%)
NR_LBD_EcR 420..652 CDD:132736 47/269 (17%)
nhr-110NP_001041195.1 ZnF_C4 25..102 CDD:197701 26/75 (35%)
Hormone_recep 195..407 CDD:365875 54/299 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165500
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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