DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-55

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503215.2 Gene:nhr-55 / 178570 WormBaseID:WBGene00003645 Length:424 Species:Caenorhabditis elegans


Alignment Length:441 Identity:86/441 - (19%)
Similarity:165/441 - (37%) Gaps:107/441 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   232 SPSSSLNGYSANESCDAKKSKKGPAPRV--QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK 294
            |||||.:..|::.|         |:..|  ..:.|.|||.::.|.|:.|:||..|..||||..:.
 Worm     3 SPSSSSSFCSSSSS---------PSSLVLYSPDTCQVCGQKSHGKHFGAVTCRACAAFFRRCGSA 58

  Fly   295 SAVYCCKFGRACEMDMYMRR---KCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKM 356
            :....|:....||   :::.   .|:.||||||..|||..|....:......::.|.|.:.....
 Worm    59 NNFKPCRRNMNCE---FLKNGWFNCKPCRLKKCQDVGMTIENFQFDRDSFSPKKAKIALENFHNQ 120

  Fly   357 TTSPSSQHGGNGSLASGGGQDFVKKEILDLMT---CEPPQHATIPLLPDEI--LAKCQARNIPSL 416
            .....:...|..:|.           ::...|   |.|..:..:..|.|::  :.| :...:|..
 Worm   121 VPFSIATFTGRSNLI-----------VISAPTEEECIPKCYIDVQFLIDKLSNVLK-EGPEVPLH 173

  Fly   417 TYN-----------------QLAVIYKL-------IWYQDGYEQPSEEDLRRIMSQPDENESQTD 457
            |.|                 :|.:|.||       :|         ::|:.::...         
 Worm   174 TPNALEKLALGLQIIRGRKRELKLITKLGKEETLGLW---------QDDMMKVAKW--------- 220

  Fly   458 VSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFA 522
              ..:..:...|:.::..|..||:   .|:....:...|.|....:|:.:......|:......|
 Worm   221 --LTYFDDFQQLSHRMRSEMLKGM---WKVWSRLETLALTAMGRRLMICQKDMIMTHTEKEQVMA 280

  Fly   523 NNRS----------YTRDSYKM---AGMADNIEDLLHFCRQMFSMKVDNVE--YALLTAIVIFSD 572
            :.:.          ||.:..:.   :.:.|..|.::   :.|..::..:||  |.:..|.:.::.
 Worm   281 HPKQIEVDISWCSRYTLEQLRFFADSDLDDRNEQVI---QAMMELQPTDVELSYMMCQACLHYAG 342

  Fly   573 R--PGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTEL 621
            :  .| |..::.|..|....:.|..|.:||     |::..|:..::.|.::
 Worm   343 KRYQG-EVLEIAERFQETLSNHLHDYYVNR-----MNMPQYSMRVANLMKI 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 30/92 (33%)
NR_LBD_EcR 420..652 CDD:132736 36/226 (16%)
nhr-55NP_503215.2 ZnF_C4 27..96 CDD:197701 27/71 (38%)
Hormone_recep 194..401 CDD:278530 36/226 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165486
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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