DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-61

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001022382.1 Gene:nhr-61 / 175142 WormBaseID:WBGene00003651 Length:415 Species:Caenorhabditis elegans


Alignment Length:473 Identity:111/473 - (23%)
Similarity:167/473 - (35%) Gaps:147/473 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 VNSISSGRDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCK 285
            |:||||.....|.||...|....:|..                |.||||.|.|.||....|.|||
 Worm     3 VDSISSSTASTSSSSPTRGTPIRKSLQ----------------CAVCGDVALGKHYGVNACNGCK 51

  Fly   286 GFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECV--------------VP 336
            ||||||:.|:..|.|:.|..|.:....|..|:.|||.:||.|||.|..|              :|
 Worm    52 GFFRRSIWKNRTYACRHGGKCLVAKEQRNACRSCRLTRCLDVGMNPRAVQGDTVEDPEWDEEAMP 116

  Fly   337 ENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLP 401
            |......:.:  |.|.|.|..||..:             .|..|::|:|.:..            
 Worm   117 ETLSISTQTD--ALKVKKKSHTSLFT-------------LDIKKEQIIDNLRA------------ 154

  Fly   402 DEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLR------RIMS-----QPDENESQ 455
              |.|:........|||                  |...|.|      :::|     .|......
 Worm   155 --IYARTDPEEFWKLTY------------------PGTYDFRYAFHNTKVVSPRTPLTPTAERIA 199

  Fly   456 T--DV--SFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRY---- 512
            |  ||  .||.       ...|.|:..|.:.....:.::|::.:.|:        |.|..|    
 Worm   200 TLNDVVADFRR-------AFVLFVDILKSIDQLRDVQEDDKMKIAKS--------RFAAFYWWLC 249

  Fly   513 -DHSSDSIFFANNRSYTRDSYKMAGMAD-----------------------NIEDLLHFCRQMFS 553
             ..|:.:  ..|...|:..||..|.::|                       ::|:|:...|:   
 Worm   250 STWSAKA--GCNGVCYSNGSYHPASISDMPKSEGKHGVRIEYVDYSGVSQKSLENLVEPLRR--- 309

  Fly   554 MKVDNVEYALLTAIVIFSDR-PGL----EKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAK 613
            |::.:.|..:...:||.:|. |.:    ||. |.|| :.:|::.|...|........:.:.....
 Worm   310 MELSDEERIVGAVMVILADPVPNVSTKTEKI-LAEA-RDFYLELLGYCIKLPEEQQGIRVSTMVL 372

  Fly   614 LLSILTELRTLGNQNAEM 631
            ||:.:.||..|...|.::
 Worm   373 LLASIMELVHLTTDNIQL 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 39/103 (38%)
NR_LBD_EcR 420..652 CDD:132736 48/260 (18%)
nhr-61NP_001022382.1 NR_DBD_HNF4A 30..103 CDD:143518 36/72 (50%)
HOLI 208..380 CDD:214658 36/193 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165650
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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