DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-16

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_494785.1 Gene:nhr-16 / 173781 WormBaseID:WBGene00003615 Length:388 Species:Caenorhabditis elegans


Alignment Length:396 Identity:74/396 - (18%)
Similarity:142/396 - (35%) Gaps:119/396 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 PRVQEEL---CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQE 318
            ||.::::   |.:|.:.|.|:|:.|..|..|..||||:|:....|.|:....|::.:.:|..|:.
 Worm     4 PRFKDKVFLKCAICQESAEGFHFGAEACRACAAFFRRTVSNRKTYSCQGNNDCDVTINIRCMCRA 68

  Fly   319 CRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEI 383
            ||..||:.|||.|..|           :::....|..:..|                        
 Worm    69 CRYIKCIEVGMNPAGV-----------QQRLPPSKTLVEVS------------------------ 98

  Fly   384 LDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKL-------------IWYQDG-- 433
            :||.|...|...:.|..|..::.     :|||...||:.::.|:             :..:||  
 Worm    99 MDLPTVSNPSILSFPSPPSSLML-----HIPSSYSNQMPILDKMRKSYETLCNARKTLHRKDGAN 158

  Fly   434 -----------YEQPSEEDLRRIMSQPD------ENESQTDVSFRHITEITILTVQLIVE----- 476
                       |::..::.::.:....|      |:.....:..:.|......|...::|     
 Worm   159 IFQDNVPKPVTYKKAIDQGMKDVKLTSDWVSWCFEDFKNLSIDQKKILFHNAYTPYFMMEGGFLS 223

  Fly   477 FAKGLPAFTKIPQEDQITLLKA-----CSS---EVMMLRMARRYDHSSDSIFFANNRSYTRDSYK 533
            ..:..|....:|..|.|..|..     ||.   ::....:.|.:..|:|...    :|.|     
 Worm   224 HIRNTPEHLVMPSGDYIDTLDLNSFYNCSESDRQISSKEIDRLFKPSNDRFI----KSVT----- 279

  Fly   534 MAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFSDRPGL-----EKAQLVEAIQSYYIDTL 593
                           ..|.|:::|..|:.:|..::::.  .||     |..::...:::..:..|
 Worm   280 ---------------LPMMSLQLDIFEFFVLFTLLLWD--TGLIEISEECIEIGTKVKTQVLKEL 327

  Fly   594 RIYILN 599
            ..|:.|
 Worm   328 DFYMRN 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 27/92 (29%)
NR_LBD_EcR 420..652 CDD:132736 33/230 (14%)
nhr-16NP_494785.1 ZnF_C4 13..81 CDD:197701 25/67 (37%)
NR_LBD 177..356 CDD:472173 28/183 (15%)

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