DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-109

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001368017.1 Gene:nhr-109 / 173780 WormBaseID:WBGene00003699 Length:367 Species:Caenorhabditis elegans


Alignment Length:388 Identity:80/388 - (20%)
Similarity:147/388 - (37%) Gaps:119/388 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 GPAPRVQ-EELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQ 317
            ||..:.: :..|.:|.:...|:|:.|..|..|..|||||::::.:|.|.....|::.:.:|..|:
 Worm     2 GPRSKGENQSKCSICQESGDGFHFGAEACRACAAFFRRSISENKLYTCSGNNDCDVTVNIRCMCR 66

  Fly   318 ECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKE 382
            .|||.||:.|||.|..|          |:|.....|.|...||||.:                  
 Worm    67 ACRLTKCIEVGMNPVGV----------RQKPGSFRKSKELISPSSSN------------------ 103

  Fly   383 ILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMS 447
                       |.....:|  ||:|.:      |.|..:....|.:..:.| |...||.:.:   
 Worm   104 -----------HDEFSRMP--ILSKMK------LNYENMRNARKALHNEVG-ENVFEEKIPK--- 145

  Fly   448 QPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQ-----EDQITLLKACSSEVM--- 504
                     :::::.       :||      :|:..:|.:|:     .|:...|.|....::   
 Worm   146 ---------EINYKE-------SVQ------QGMKDYTLMPEWVSSCFDEFRTLSADQKNILFRN 188

  Fly   505 ------MLRMA--RRYDHSSDSIFFAN---------NRSYTRDSYKMAGMADNIEDLL-----HF 547
                  |:..|  ...::..||:.|.:         .|.|...:::.....::||:|.     ::
 Worm   189 SYIPFFMMETAFLSHINNMPDSVIFPSGDYCDMKNLERYYNSTNFEKKISTEDIENLFKPFYDNY 253

  Fly   548 CRQ----MFSMKVDNVEYALL-------TAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILN 599
            .|.    |.:::||..|:..|       |.:|..:|    |..::...:::.....|..|:.|
 Worm   254 KRSLLLPMMNLQVDIYEFLTLFTLLHWDTGLVEITD----ECLEIGTKVKAEVFKELDFYLTN 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 29/89 (33%)
NR_LBD_EcR 420..652 CDD:132736 36/221 (16%)
nhr-109NP_001368017.1 ZnF_C4 12..80 CDD:197701 25/67 (37%)
Hormone_recep 142..337 CDD:459675 31/200 (16%)

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