DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nr1h4

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_002936891.3 Gene:nr1h4 / 100489310 XenbaseID:XB-GENE-487942 Length:478 Species:Xenopus tropicalis


Alignment Length:453 Identity:164/453 - (36%)
Similarity:225/453 - (49%) Gaps:87/453 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 SSGRDDLSPSSSLNGYSANE---SCDAKKSKKGPAPRV----QEELCLVCGDRASGYHYNALTCE 282
            ::|..||....|.|.||.:.   |..|.| |...:|||    .:|||:||||.||||||||||||
 Frog    87 ANGIYDLKRIPSENLYSIDTDIISLPATK-KHRVSPRVGRVKGDELCVVCGDNASGYHYNALTCE 150

  Fly   283 GCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREK 347
            |||||||||:||:|||.||.|..||||||||||||||||:||..:||..||::.|.||..||..|
 Frog   151 GCKGFFRRSITKNAVYKCKNGGNCEMDMYMRRKCQECRLRKCKQMGMLAECLLTEIQCKSKRLRK 215

  Fly   348 --KAQKEKD----------KMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLL 400
              |.|.||.          |..||.:..:..|..|.         :|.::|:......|..    
 Frog   216 HAKPQSEKSFQEDIDGHETKQVTSTTKTNQENTELT---------QEQMNLLQYVMDSHVK---- 267

  Fly   401 PDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITE 465
                              |:|               |.....|.|:    :.:..:|.:|..:||
 Frog   268 ------------------NRL---------------PQSLATRLIL----QEDMGSDDNFVFLTE 295

  Fly   466 ITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRD 530
            :....||::|||.|.||.|..:..||||.|||..:.|.|.||.|..::..    ....:.....:
 Frog   296 MATRHVQILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAELFNRK----LLERHTDVLEE 356

  Fly   531 SYKMAGMA-DNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFS-DRPGLEKAQLVEAIQSYYIDTL 593
            ..:.:|:: |.|..:.||.:.:..:|:...|||||||:||.: ||..|:..:.||.:|..:    
 Frog   357 RIRKSGISHDYINPMFHFYKSVGELKMVEEEYALLTAVVILTPDRQYLKDKESVEKLQETF---- 417

  Fly   594 RIYILNRHC----GDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDV 652
             ::||.:.|    .|:..  .:|:||..||||||..:.:|:|..|.::.:.|....|.|||||
 Frog   418 -LHILEKICKRCHPDNPQ--HFARLLGRLTELRTFSHHHADMLMSWRVNDHKFTPLLCEIWDV 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 65/91 (71%)
NR_LBD_EcR 420..652 CDD:132736 71/237 (30%)
nr1h4XP_002936891.3 NR_DBD_FXR 129..212 CDD:143520 61/82 (74%)
NR_LBD 252..473 CDD:416257 72/272 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 132 1.000 Domainoid score I5066
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1137281at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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