Protein Alignment EcR and rorc

DIOPT Version :9

• Sequence 1: NP_001163061.1
• Gene: EcR / 35540
• FlyBaseID: FBgn0000546
• Length: 878
• Species: Drosophila melanogaster
• Sequence 2: XP_001344049.3
• Gene: rorc / 100004847
• ZFINID: ZDB-GENE-110411-42
• Length: 480
• Species: Danio rerio
• Alignment Length: 493
• Identity: 130/493 - (26%)
• Similarity: 211/493 - (42%)
• Gaps: 115/493 - (23%)

  Fly   258 RVQEEL--CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECR 320
            |.|.|:  |.:|||::||.||..:||||||||||||.:.|..|.|.....|.:|...|.:||.||
Zfish     3 RAQIEVIPCKICGDKSSGVHYGVITCEGCKGFFRRSQSSSVQYSCSRQSNCPIDRASRNRCQSCR 67

  Fly   321 LKKCLAVGMRPECV------------------------------VPENQCAMKRREKKAQKEKDK 355
            ||||:|.||..:.|                              |.|.|.....|..|..:|:..
Zfish    68 LKKCVAQGMSRDAVKFGRMSKRQRDSLFAEVERHRQHQRLQANSVQEPQPLQAYRSSKDTREQPS 132

  Fly   356 MTTSP----------------------------------------SSQHGGNGSLASGGGQDFVK 380
            ....|                                        ..:.|.|.||::|.|.:..:
Zfish   133 HLIPPLPAAYPFSVEPELAGCPAEVIPYLDCHIVEAQTQGLAYRVPLRRGENNSLSAGRGFESTR 197

  Fly   381 ---KEILDLMTCEPPQHATIP---------LLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDG 433
               :.||::...|...|...|         .|..|.||....|:....|..:|..:..|.|
Zfish   198 STPESILNMTGSEMGFHPFDPESSFFSYPTSLQTEELAASIIRSHKETTQYRLEELQALRW---- 258

  Fly   434 YEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKA 498
             :..|.|::....|:|      .|..:::........||.:|||||.:|.|.::.|.|||.|||:
Zfish   259 -KVFSREEVHIYQSKP------VDEMWQYCAVRLSDAVQYVVEFAKRIPGFRQLCQNDQIALLKS 316

  Fly   499 CSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYAL 563
            .|.||:::||.|.::.:::::||....:.| :.:|....:|.|..:..|...:.:::::..:.|:
Zfish   317 GSMEVVLVRMTRMFNTANNTVFFDGKYAGT-ELFKSLACSDLIAAVFEFANNLCALRLNEQQMAV 380

  Fly   564 LTAIVIFS-DRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQ 627
            .||:::.: |||.||..:.|:.:::.....|| :||:|...:|:    ..||...:..||:
Zfish   381 FTAMILINPDRPCLEDRERVQRVRTEVELALR-HILHRDNQESL----LQKLYQRVPVLRS---- 436

  Fly   628 NAEMCFSLKLKNRKLPKFLEEIW--DVHAIPPSVQSHL 663
               ||   .|...|| ::..:::  .||::.|.:...|
Zfish   437 ---MC---ALHIEKL-QWFRQLYPLTVHSLFPPLYKEL 467

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
EcR	NP_001163061.1	NR_DBD_EcR	261..351	CDD:143535	44/121 (36%)
		NR_LBD_EcR	420..652	CDD:132736	61/234 (26%)
rorc	XP_001344049.3	NR_DBD_ROR	4..98	CDD:143526	40/93 (43%)
		NR_LBD_ROR_like	232..468	CDD:132737	70/264 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170593373
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.840