DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and smyd4

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001070062.1 Gene:smyd4 / 767654 ZFINID:ZDB-GENE-060929-248 Length:753 Species:Danio rerio


Alignment Length:579 Identity:120/579 - (20%)
Similarity:183/579 - (31%) Gaps:168/579 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TECPVCGVAASQA-----CTRCKMVRYCDREHQKQHWPQ-HKRRCRPFSEEQDA--ELGRYLKVT 61
            ||...|....||:     |.:|...|||....||..|.| |:..| |...:..|  .|| :|.:.
Zfish   241 TEDRHCHHCLSQSLSFVPCPKCSYARYCGESCQKDAWDQWHQWEC-PVGADLLAIGVLG-HLALR 303

  Fly    62 QNIAAGQIVFIEEPLVVGPK-------WYLSDADKEASNVPCVGCYTPCRLGKHQCRRCRWPVCS 119
            ..:.|||     ..:.:|.|       .|.:|:..:.|            ||..    |...:..
Zfish   304 VVLKAGQ-----TEVQMGIKNTKDHVTTYKNDSPVQLS------------LGGD----CGKSLDH 347

  Fly   120 AGCKHESMECSVLSLGSGSPTRADARSLNDYFRGDALLVLKCLLLQRQSPTKWSALLEMQSHEEE 184
            ..|.|.|....:.||   .|..|.....:.:.....:.|:...|.....|.||      .|.::|
Zfish   348 TDCFHGSSYMGIYSL---LPHVAQHSPASRFLMAITMAVIYGKLQGGPPPNKW------MSFKDE 403

  Fly   185 RKGTDLYEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVEL- 248
              |.....:.|..::.....|.:.:|:         |..:.:..: .:.|.:.|.::..|.:.: 
Zfish   404 --GVKASWQPEMSMLGATALRHMMQLR---------CNAQAITAV-RVKEESGMAVQSSSEIRIA 456

  Fly   249 SGLFRQACMMEHACQPNCDFQFDNKTQ------------------------QVAVRAGCDLRKGD 289
            :.:|....::.|:|.||....|....|                        .|.|||..||..|.
Zfish   457 TAIFPVLSLLNHSCSPNTSISFTTGFQPDPHNQLGCSEGHFDHPKGSRSGVTVTVRASKDLTAGQ 521

  Fly   290 HLRITYTNILWGTQLRQHHLRLTKH--FSCRCSRC-LDPTEYGTYISALTCLGDVNQTCGGTHLP 351
            .:...|.......::::....|.:.  |.|.|..| .|.:|........|..|.....||     
Zfish   522 EILHCYGPHRSRMEVKERQRLLLEQYFFQCVCQACQRDLSEGSPNAKEHTAPGMKCVKCG----- 581

  Fly   352 VDPLDENTQ-WKC--DTC----------------PMIVDGAYVAELQSHMTEQVEGLLAGCPSAN 397
             .||..:|. :.|  .:|                .:::|.|.....|..:.|.:..|.:....||
Zfish   582 -KPLQSHTDGYTCSWSSCGHQISSADVQNRLQGFQLLLDEAVHLMEQDRLNEALHILQSAFSQAN 645

  Fly   398 QV---------EL--LLARLTHMLHPNHFHTFNLKHTL--IQLYGNEAGLEL------------- 436
            .:         ||  .||||............:||.:|  ||....|..:||             
Zfish   646 SILTETHPFQGELADALARLYASTGEWSLAASHLKRSLVAIQAQFGEDSIELGRQLFKLAQLHFN 710

  Fly   437 ---GVLSNTQLERKLRL--------CGELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQ 484
               ||.|.:.:.|..||        |.||..                   |.|:.|.||
Zfish   711 GRDGVASLSVIPRARRLLSLHCSPRCEELQE-------------------LSEMEHCLQ 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009 13/41 (32%)
SET 185..295 CDD:279228 22/134 (16%)
smyd4NP_001070062.1 TPR_11 68..134 CDD:290150
TPR repeat 68..96 CDD:276809
TPR repeat 101..134 CDD:276809
zf-MYND 246..285 CDD:280009 13/38 (34%)
SET <456..532 CDD:214614 15/75 (20%)
T6SS_VasJ <603..679 CDD:299836 13/75 (17%)
TPR_12 615..683 CDD:290160 15/67 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582733
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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