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Protein Alignment SmydA-5 and Smyd3

DIOPT Version :9

Sequence 1:	NP_610202.3	Gene:	SmydA-5 / 35538	FlyBaseID:	FBgn0033061	Length:	553	Species:	Drosophila melanogaster
Sequence 2:	NP_081464.1	Gene:	Smyd3 / 69726	MGIID:	1916976	Length:	428	Species:	Mus musculus

Alignment Length:	460	Identity:	94/460 - (20%)
Similarity:	157/460 - (34%)	Gaps:	156/460 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly    52 AELGRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGKH---QCRRC 113
            |..|..|:....:..|:::|..:||..       ...|.:..|.|    ..|.|||.   :|.:|
Mouse    12 ANRGNGLRAVAPLRPGELLFRSDPLAY-------TVCKGSRGVVC----DRCLLGKEKLMRCSQC 65

  Fly   114 R-WPVCSAGCKHES-----MECSVLSLGSGSPTRADARSLNDYFRGDALLVLKCLL--LQRQSPT 170
            | ...|||.|:.::     .|||.|            :|....:..|::.:|..::  |..:.|:
Mouse    66 RIAKYCSAKCQKKAWPDHRRECSCL------------KSCKPRYPPDSVRLLGRVIVKLMDEKPS 118

  Fly   171 ---KWSALLEMQSH-----EEERKGT-------------------------DLYEEAEKRVVTYL 202
               |..:..:::|:     |::::|.                         ||:|...|
Mouse   119 ESEKLYSFYDLESNISKLTEDKKEGLRQLAMTFQHFMREEIQDASQLPPSFDLFEAFAK------ 177

  Fly   203 QKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVELSGLFRQACMMEHACQPNCD 267
               .:|       |..|.|..||..                .||   ||:....::.|:|.|||.
Mouse   178 ---VIC-------NSFTICNAEMQE----------------VGV---GLYPSMSLLNHSCDPNCS 213

  Fly   268 FQFDNKTQQVAVRAGCDLRKGDHLRITYTNILWGTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYI 332
            ..|:.  ..:.:||..::..|:.|.|.|.::|..::.|:..||....|.|.|.||....:
Mouse   214 IVFNG--PHLLLRAVREIEAGEELTICYLDMLMTSEERRKQLRDQYCFECDCIRCQTQDK----- 271

  Fly   333 SALTCLGDVNQTCGGTHLPVDPLDENTQWKCDTCPMIVDGAYVAELQSHMT-EQVEGLLAGCPSA 396
                   |.:...|         ||.. ||    .:......:.||::|.. |||..|.....::
Mouse   272 -------DADMLTG---------DEQI-WK----EVQESLKKIEELKAHWKWEQVLALCQAIINS 315

  Fly   397 NQVELLLARLTHMLHPNHFHTFNLKHTLIQLYGNEAGLELGVLSNTQLERKLRLCGELYNVCRRL 461
            |.              |.....|:....:.....:|.:.||:|...           |:...|.:
Mouse   316 NS--------------NRLPDINIYQLKVLDCAMDACINLGMLEEA-----------LFYAMRTM 355

  Fly   462 DPYSI 466
            :||.|
Mouse   356 EPYRI 360

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.