DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and smyd1b

DIOPT Version :10

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001034725.1 Gene:smyd1b / 569027 ZFINID:ZDB-GENE-060522-1 Length:486 Species:Danio rerio


Alignment Length:383 Identity:80/383 - (20%)
Similarity:146/383 - (38%) Gaps:100/383 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GRYLKVTQNIAAGQIVFIEEPL--VVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQ-CRRCRW- 115
            ||.|:.|:...||.::|.|.|.  ||        .|.:||:: |..|:.  |..|.| |.:||: 
Zfish    13 GRGLRATKEAWAGDVLFAEPPFASVV--------FDSQASSI-CHSCFR--RQEKLQRCGQCRFA 66

  Fly   116 ----PVCS-AGCKHESMECSVLSLGSGSPTRADARSLNDYFRGDALLVLKCLLLQRQ-------S 168
                ..|. ||.:...:||:.:.. .|.|...:.|             |...:|.|.       |
Zfish    67 QYCDKTCQRAGWEEHKLECAAIKT-YGKPPSENVR-------------LAARILWRMDKQGSVVS 117

  Fly   169 PTKWSALLEMQSH-----EEERKG--TDLYEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEML 226
            ..:.:.|.:::.|     |::.|.  .|::     ..:.|..       :.:.|:.:     :.:
Zfish   118 DNQLTTLEDLEDHICDISEDDLKDFKVDIH-----NFLDYWP-------RNSKPHTV-----DSV 165

  Fly   227 HRLCGIIETNFMVIELPSGVEL--SGLFRQACMMEHACQPNCDFQFDNKTQ-----------QVA 278
            ..:.|:|..|..::....|::.  .|||...|::.|.|.|||....:|..|           ::.
Zfish   166 SHILGVINCNGFMVSDQRGLQAVGVGLFPNLCLVNHDCWPNCTVILNNGNQSAIDTVFHSQKRIE 230

  Fly   279 VRAGCDLRKGDHLRITYTNILWGTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQ 343
            :||...:..|:.:.:.|.:.|..:..||..|:....|.|.|..|.:.            :.|..:
Zfish   231 LRALGKISAGEEVTVAYVDYLNVSADRQRLLKQQYFFDCTCKHCTEK------------IKDDLK 283

  Fly   344 TCG----GTHLPVDPLDENTQW------KCDTCPMIVDGAYVAELQSHMTEQVEGLLA 391
            ..|    |..:|.:.:.|.|::      |.:...:..:...|.::.....|:.|.:||
Zfish   284 MAGAEVDGVKVPEEQVKEVTEFSRQKLEKMEKARIEANYNEVVKICRECVEKQENVLA 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:460312
SET_SMYD <232..322 CDD:380997 25/102 (25%)
smyd1bNP_001034725.1 SET_SMYD1 2..276 CDD:380924 68/304 (22%)
zf-MYND 47..85 CDD:460312 11/39 (28%)
Blue background indicates that the domain is not in the aligned region.

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