DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-5 and Smyd3

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster


Alignment Length:575 Identity:117/575 - (20%)
Similarity:186/575 - (32%) Gaps:189/575 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TECPVCGVAASQ----------------ACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQDAE 53
            ||.|...|..||                .|:.|:.|.||.|..|.|.|.|||..| ||.:     
  Fly    43 TEKPFAFVLKSQYRLERCDNCLEATKVLKCSNCRYVSYCHRSCQMQAWGQHKHEC-PFLK----- 101

  Fly    54 LGRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQCRRCRWPVC 118
                 ||             .|.||      .||.:..           |||             
  Fly   102 -----KV-------------HPRVV------PDAARML-----------CRL------------- 118

  Fly   119 SAGCKHESMECSVLSLGSGSPTRADARSLNDYFRGDALLVLKCLLLQRQSPTKWSALLEMQSHEE 183
                        :|.|..|          .|..||         ........|:.   ::.||..
  Fly   119 ------------ILRLEHG----------GDLIRG---------YYTEHGSRKFR---DLMSHYA 149

  Fly   184 ERKGTDL---YEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSG 245
            |.|...:   :.::...|:|.:    :.....|.||     ..|::.....:|...|.:::....
  Fly   150 EIKNDPMRLEHLDSLHAVLTDM----MAESPSTVPN-----KTELMSIYGRLITNGFNILDAEMN 205

  Fly   246 VELSGLFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILWGTQLRQHHLR 310
            ...:.::....:.:|:||||....|:.....|......:......:.|:|.::|...:.|:..|:
  Fly   206 SIATAIYLGVSITDHSCQPNAVATFEGNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLK 270

  Fly   311 LTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHLPVDPLDENTQWKCDT--CPMIVDGA 373
            ...:|.|.||:|.|..|....::|| |   .|:.||..    ..:|.|...:||.  .|.:.:..
  Fly   271 EHYYFLCVCSKCTDAKESKEMLAAL-C---PNRNCGAG----ISVDRNNCPRCDAGISPKLRNAF 327

  Fly   374 YVA-ELQSHMTEQVEGL--LAGCPSANQVELLLARLTHMLHPNHFHTFNLKHTLIQLYGNEAGLE 435
            ..| .|..|..|.::.:  |..|      ::.|.:.|.:.||  .:.:.:| ||...:  ||.:|
  Fly   328 NEAMTLTRHNLENMKDVAYLDVC------KVCLDKQTGVFHP--LNVWYVK-TLDAAF--EAAIE 381

  Fly   436 LGVLSNTQLERKLRLCGELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSLLGL 500
            :|..|:.                                  ::....|....|:.......||||
  Fly   382 VGKWSDA----------------------------------LDYGQRLLPGFRKYHGPWNPLLGL 412

  Fly   501 AQSRLREAHMVLEKEQ--ESVAGKKLNEKLQMEIFECEKLILALAYNQDHEANTK 553
                   .||.|.|.|  |.      :.|..:...|..:.||.:.:.:||...|:
  Fly   413 -------LHMKLGKIQLYEG------HSKEALHHLEEAQRILTVTHGRDHRLLTE 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009 16/51 (31%)
SET 185..295 CDD:279228 17/112 (15%)
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 12/36 (33%)
TPR_12 377..440 CDD:290160 19/109 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45473054
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2289
SonicParanoid 00.000 Not matched by this tool.
54.780

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