DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and SmydA-6

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster


Alignment Length:533 Identity:147/533 - (27%)
Similarity:244/533 - (45%) Gaps:67/533 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 RRCRPFSEEQDAELGRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVG---CYTP 102
            |:|   ..:|:..|||:.....|:.||:.:.:|.|:||               :|.:|   |...
  Fly    10 RKC---EIKQNDTLGRFAVALCNVRAGETLLLENPIVV---------------LPLMGERRCSKC 56

  Fly   103 CRLGKHQCRRCR-WPVCSAGCKHESMECSVLSLGSGSPTRADARSLNDYFRGDALLVLKCLLLQR 166
            ..|.:..||:|| ..:|.....|:..:|..|:..:.|..:.:.....::  .:...|||||||:.
  Fly    57 FNLTESFCRKCRLLALCEDCSDHDERDCKRLAEMNFSDDQVELLQKKEH--TEIQPVLKCLLLRE 119

  Fly   167 QSPT--KWSALLEMQSHEEERKGTDLYEEAEKRVVTYLQ-KRFLCRLKQTNPNLLTDCGPEMLHR 228
            ...|  .:..:.:|.|....|:||::::..::...|.|. ...|.:|:..       ...:::..
  Fly   120 HEETLPLYEEMSQMDSQLMTRRGTEVWKNYQEHAFTPLDYGGVLAQLRGA-------ADEDLVQG 177

  Fly   229 LCGIIETNFMVIELPS-GVELSGLFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLR 292
            |.||::.|...|..|. |..:.||:|:|.:..|:|.||.....|:: |::.|.|...:..|:.|.
  Fly   178 LLGILDINAYEIRAPEVGGAMRGLYRRAGLFAHSCTPNLVISIDDE-QRIKVYANRFIAAGEILY 241

  Fly   293 ITYTNILWGTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQ-TCGGTHLPVDPLD 356
            ..|||:|.||:.|:..|::.|.|.|.|.||.||||.||::|:..|    :| :|...::...|  
  Fly   242 NCYTNVLLGTEERRKILKVGKCFDCSCPRCQDPTELGTHMSSFIC----SQCSCVDGYIVRQP-- 300

  Fly   357 ENTQWKCDTCPMIVDGAYVAELQSHMTEQV-EGLLAGCPSANQVELLLARLTHMLHPNHFHTFNL 420
            :...|:|...|   :.....|..|:|.|:. |.:........:.|||||:|:.:||.|||...:|
  Fly   301 DTGIWQCLLNP---EHTLKQEFVSNMLERAKEEIFHARDDIYRQELLLAKLSRLLHRNHFLMLDL 362

  Fly   421 KHT----LIQLYGNEAGLELGVLSNTQL-ERKLRLCGELYNVCRRLDPYSIKLAIYVTVILIEVA 480
            |..    |.|:..|     :|...|.:: |||:|||.|:..|.:.:.|...:|.   .:.|.|:|
  Fly   363 KQNIASILRQILQN-----MGTRPNKKVYERKIRLCQEILLVLKVVTPGISRLK---AIALYELA 419

  Fly   481 HTLQEQARRAPAE----GTSLLG---LAQSRLREAHMVLEKEQESVAGKKLNEKLQMEIFECEKL 538
            :|..|.||:...|    ...||.   ..:..|||:..:|..|..:....:|...:..|:.|.:..
  Fly   420 NTQAELARKMYTEMEHSANDLLAELERVEVMLRESLRMLLFEPLATPEGQLTRSMLRELKELQDD 484

  Fly   539 ILALAYNQDHEAN 551
            |..|..:.|...|
  Fly   485 IKNLRESDDDVVN 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009 1/1 (100%)
SET 185..295 CDD:279228 28/111 (25%)
SmydA-6NP_611182.1 SET <179..244 CDD:279228 20/65 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I1875
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2203
65.970

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