DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and SmydA-7

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001261039.1 Gene:SmydA-7 / 36916 FlyBaseID:FBgn0034182 Length:488 Species:Drosophila melanogaster


Alignment Length:510 Identity:155/510 - (30%)
Similarity:230/510 - (45%) Gaps:66/510 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 DAELGRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQCRRCR- 114
            |.:|||:|..:..|..|..:..|.||:|.|.|       |...:.|..|.....:   .||||: 
  Fly    13 DEKLGRHLVASIAIEPGDTILEERPLLVAPHW-------ECHQLKCAQCLQESYV---ICRRCQV 67

  Fly   115 WPVCSAGCKHESMECSVLSLGSGSPTRADARSLNDYFRGDALLVLKCLLLQRQSPTKWSA--LLE 177
            :|:|....:|:..||...:.|:|.....|....|....|    :||.|||.....||...  |::
  Fly    68 FPLCMDCNQHDEFECEFFTSGAGKALCKDILVKNFGICG----LLKLLLLLENPRTKGDCQMLID 128

  Fly   178 MQSH-EEERKGTDLYEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIE 241
            :..: .:.|.|..:::|.|:.||..|.:..|..:..|. .|.:|.    ||..|..|::|...:.
  Fly   129 VPINLSDYRDGEGMWQEHEELVVRPLMESGLADVLPTQ-ELTSDA----LHAHCIRIDSNSFEVT 188

  Fly   242 LPSGVELSGLFRQACMMEHACQPN----CDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILWGT 302
            ...|..|.|:|.....:.|.|.||    .|.||:.|     :.|...|:.||.:..:|||.|.||
  Fly   189 AKDGDTLKGIFVWGATLPHHCVPNTVVALDEQFNMK-----LYAAVPLQPGDIIYNSYTNPLMGT 248

  Fly   303 QLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHLPVDPLDENTQ---WKCD 364
            ..|||.|||::...|.|||||||||.||::|:|.|     :.|.|  ..|..:|.|.:   |:|.
  Fly   249 SQRQHQLRLSRRLECICSRCLDPTEMGTHMSSLKC-----KECPG--FSVCEIDSNGKLGDWRCP 306

  Fly   365 TCPMIVDGAYVAELQSHMTEQVEGLLAGCPSANQV-ELLLARLTHMLHPNHFHTFNLKHTLIQLY 428
            .|..::..|.|.|||:    .|...|.......|| |.||.:...:||||||...::|..:..: 
  Fly   307 DCRALLTAAEVHELQA----AVGSALVDAMGDLQVYEALLTQYGPLLHPNHFMLLDIKQNIASI- 366

  Fly   429 GNEAGLELGVLSNTQ-------LERKLRLCGELYNVCRRLDP-----YSIKLAIYVTVILIEVAH 481
                 |....|.|:.       |.|::.||.:|..|||.:.|     |:|.|..|: :.|:|:..
  Fly   367 -----LRAAALMNSMDQPCKKLLARRVELCSDLLPVCRAVVPGISKLYAIGLFEYL-LALVELVE 425

  Fly   482 TLQEQARRAPAEGTSLLGLAQSRLREAHMVLEKEQESVAGKKLNEKLQMEIFECE 536
            ....::..:..|..:.|..|.....||..:|..|.|:.|...|.:::.||:...|
  Fly   426 LQFAESDLSKKEYVAHLRTASLVATEAMDLLRFEPENSAEGYLADRISMELERIE 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009
SET 185..295 CDD:279228 32/113 (28%)
SmydA-7NP_001261039.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452049
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2203
65.850

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