DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-5 and SmydA-1

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_610944.1 Gene:SmydA-1 / 36581 FlyBaseID:FBgn0033917 Length:513 Species:Drosophila melanogaster


Alignment Length:557 Identity:158/557 - (28%)
Similarity:237/557 - (42%) Gaps:86/557 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CPVCGVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQDAELGRYLKVTQNIAAGQIVF 71
            |.||.......|:.|..|.||..:||||.|..||..|.||....:.:|||:|..|:.|...:||.
  Fly     4 CHVCEEPTKNKCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQLGRHLVATRTIKPYEIVL 68

  Fly    72 IEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGKH-QCRRCRWPVCSAGCK----HESMECSV 131
            .|.|||.||        .:.|...|:||........| :|.:|.||:|...||    |:: ||.:
  Fly    69 KEAPLVRGP--------AQISAPVCLGCLNGIEAEDHIECEQCGWPLCGPECKSLDEHKA-ECGL 124

  Fly   132 LSLGSGSPTRADARSLN-DYFRG-----DALLVLKCLLLQRQSPTKWSALLEMQSHEEERKGTDL 190
                    |:...:.:| ..|.|     ..|..::|||:...|..|.|...:::|.|..|:|::.
  Fly   125 --------TKDRGQKVNVQEFGGPHPLYTCLSTVRCLLIGETSTEKASKFQDLESLESTRRGSNQ 181

  Fly   191 YEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIEL--PSGVELSGLFR 253
            ::.....:..::.|.|..: |.|.         |.:.:..|.::.|...:..  ||.|   .:|.
  Fly   182 WKADLVSIGQFIPKFFKTQ-KFTE---------EEIMKAVGALQINGHEVPTTDPSHV---AVFY 233

  Fly   254 QACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILWGTQLRQHHLRLTKHFSCR 318
            .|...|::|.||....| ||.....:.|..:::|..||.|.|::.:|||..||.||..||.|.|.
  Fly   234 TASFTENSCLPNLAKSF-NKNGHCILWAPREIKKNAHLSICYSDAMWGTADRQRHLMQTKLFKCA 297

  Fly   319 CSRCLDPTEYGTYISALTCLGDVNQTCGGTHLPVDPLDENTQWKCDTCPMIVDGAYVAELQSHMT 383
            |.||:|.||..|..||:.|   .::.|||..||....:.|..|:|..|...|...||..:.....
  Fly   298 CERCVDVTELDTNYSAIKC---EDRQCGGLMLPTKADEWNGSWRCRECHKQVQKHYVERILERAG 359

  Fly   384 EQVEGLLAGCPSANQVELLLARLTH---MLHPNHFHTFNLKHTLIQLYGNEAGLELGVLSNTQLE 445
            :.::.:      ....|..|..|.|   .|.|.|||...:|..|:||...:. .||.|:.:.:|.
  Fly   360 KDIQSM------EKIAENGLKYLKHYEKWLPPQHFHMSEIKILLVQLLAKDQ-KELMVIPDDRLL 417

  Fly   446 RKLRLCGELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSLLGLAQSRLREAHM 510
            .||....||..:..:|.|..::.   :..:..|:...:.||.||...| |||             
  Fly   418 LKLNFARELVELYEKLTPCEVRT---LGTLCFELHSAIAEQTRRVALE-TSL------------- 465

  Fly   511 VLEKEQESVAGKKLNEKLQMEIFECEKLILALAYNQD 547
                        ...::|:..:|..:|.:..|.|..|
  Fly   466 ------------SPKDRLEESLFYVDKCVNYLKYESD 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009 15/35 (43%)
SET 185..295 CDD:279228 26/111 (23%)
SmydA-1NP_610944.1 zf-MYND 4..40 CDD:280009 15/35 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 77 1.000 Inparanoid score I1875
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 1 1.000 - - FOG0010009
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46455
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.970

Return to query results.
Submit another query.