DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and smyd1a

DIOPT Version :10

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_991103.2 Gene:smyd1a / 321245 ZFINID:ZDB-GENE-030131-9825 Length:485 Species:Danio rerio


Alignment Length:450 Identity:99/450 - (22%)
Similarity:168/450 - (37%) Gaps:118/450 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GRYLKVTQNIAAGQIVFIEEPL--VVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQCRRCRWP- 116
            ||.|:.|::::||::||.|...  ||        .|..:..| |..|:.. ::..|:|.:|::. 
Zfish    18 GRGLRGTRDLSAGEVVFAEASFAAVV--------LDSLSLQV-CHSCFRR-QVNPHRCAQCKFAH 72

  Fly   117 VCSAGCKHES-----MECSVLSLGSGSPTRADARSLNDYFRGDALLVLKCL-LLQRQ----SPTK 171
            .|...|:..:     .|||.:        |...::.|:..|    ||.:.| .:|:.    |.::
Zfish    73 YCDRTCQRAAWDEHRKECSAI--------RNIGKAPNENVR----LVARILWRIQKHTGLVSDSQ 125

  Fly   172 WSALLEMQSHEEERKGTDLYE--EAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIE 234
            .:.|..::.|.......||.|  ...|...||..|:...            .|.:.:..|.|:|.
Zfish   126 LTTLDMLEDHLSRMTPEDLKELKVDVKTFYTYWPKKSKA------------VGEDYVSHLFGVIS 178

  Fly   235 TNFMVIELPSGVEL--SGLFRQACMMEHACQPNC------------DFQFDNKTQQVAVRAGCDL 285
            .|...:....|::.  .|||...|::.|.|.|||            |..| :.::::.:||...:
Zfish   179 CNGFTLSDQRGLQSVGIGLFPNLCLVNHDCWPNCTVILNHGDQSALDASF-HSSRRIELRALEPI 242

  Fly   286 RKGDHLRITYTNILWGTQLRQHHLRLTKHFSCRCSRCLD-----------PTEYGTYISA----- 334
            ..|..|.::|.:.|..:..||..|:...:|.|:|..|::           |||.|...||     
Zfish   243 SAGQELTVSYVDFLSVSTDRQRLLQQQYYFDCKCEHCVNGTKDELMTAVKPTEDGKQPSAEVVKQ 307

  Fly   335 LTCLG-------DVNQTCGGTHLPVDPLDENTQWKCDTC-----PMIVD-GAYVAELQSHMTEQV 386
            ||...       :..:..|..|..:.        .|..|     |:..| ..:|..:.|..:|.:
Zfish   308 LTDFSLQALVKIEAARAQGNFHEVIR--------ICRECLEKQDPVFADTNVHVLRVLSTASEVL 364

  Fly   387 EGLLAGCPSANQVELLLARLTHMLHPN--------------HFHT--FNLKHTLI-QLYG 429
            ..|.....:|...:.::.....:.|||              |:|.  ....|.|| :.||
Zfish   365 SFLQQFQEAAGYAQRMVDGYMKLYHPNNAQLGMAIMRAGVTHWHAGLIEAAHGLICRAYG 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:460312
SET_SMYD <232..322 CDD:380997 26/103 (25%)
smyd1aNP_991103.2 SET 9..279 CDD:394802 69/295 (23%)
zf-MYND 52..90 CDD:460312 7/38 (18%)
FxSxx_TPR <321..435 CDD:468560 20/111 (18%)
Blue background indicates that the domain is not in the aligned region.

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