DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and smyd1a

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_991103.2 Gene:smyd1a / 321245 ZFINID:ZDB-GENE-030131-9825 Length:485 Species:Danio rerio


Alignment Length:450 Identity:99/450 - (22%)
Similarity:168/450 - (37%) Gaps:118/450 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GRYLKVTQNIAAGQIVFIEEPL--VVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQCRRCRWP- 116
            ||.|:.|::::||::||.|...  ||        .|..:..| |..|:.. ::..|:|.:|::. 
Zfish    18 GRGLRGTRDLSAGEVVFAEASFAAVV--------LDSLSLQV-CHSCFRR-QVNPHRCAQCKFAH 72

  Fly   117 VCSAGCKHES-----MECSVLSLGSGSPTRADARSLNDYFRGDALLVLKCL-LLQRQ----SPTK 171
            .|...|:..:     .|||.:        |...::.|:..|    ||.:.| .:|:.    |.::
Zfish    73 YCDRTCQRAAWDEHRKECSAI--------RNIGKAPNENVR----LVARILWRIQKHTGLVSDSQ 125

  Fly   172 WSALLEMQSHEEERKGTDLYE--EAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIE 234
            .:.|..::.|.......||.|  ...|...||..|:...            .|.:.:..|.|:|.
Zfish   126 LTTLDMLEDHLSRMTPEDLKELKVDVKTFYTYWPKKSKA------------VGEDYVSHLFGVIS 178

  Fly   235 TNFMVIELPSGVEL--SGLFRQACMMEHACQPNC------------DFQFDNKTQQVAVRAGCDL 285
            .|...:....|::.  .|||...|::.|.|.|||            |..| :.::::.:||...:
Zfish   179 CNGFTLSDQRGLQSVGIGLFPNLCLVNHDCWPNCTVILNHGDQSALDASF-HSSRRIELRALEPI 242

  Fly   286 RKGDHLRITYTNILWGTQLRQHHLRLTKHFSCRCSRCLD-----------PTEYGTYISA----- 334
            ..|..|.::|.:.|..:..||..|:...:|.|:|..|::           |||.|...||     
Zfish   243 SAGQELTVSYVDFLSVSTDRQRLLQQQYYFDCKCEHCVNGTKDELMTAVKPTEDGKQPSAEVVKQ 307

  Fly   335 LTCLG-------DVNQTCGGTHLPVDPLDENTQWKCDTC-----PMIVD-GAYVAELQSHMTEQV 386
            ||...       :..:..|..|..:.        .|..|     |:..| ..:|..:.|..:|.:
Zfish   308 LTDFSLQALVKIEAARAQGNFHEVIR--------ICRECLEKQDPVFADTNVHVLRVLSTASEVL 364

  Fly   387 EGLLAGCPSANQVELLLARLTHMLHPN--------------HFHT--FNLKHTLI-QLYG 429
            ..|.....:|...:.::.....:.|||              |:|.  ....|.|| :.||
Zfish   365 SFLQQFQEAAGYAQRMVDGYMKLYHPNNAQLGMAIMRAGVTHWHAGLIEAAHGLICRAYG 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009
SET 185..295 CDD:279228 28/125 (22%)
smyd1aNP_991103.2 zf-MYND 52..90 CDD:280009 7/38 (18%)
SET <203..252 CDD:279228 11/49 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582766
Domainoid 1 1.000 54 1.000 Domainoid score I11197
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.750

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