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Protein Alignment SmydA-5 and Smyd2

DIOPT Version :9

Sequence 1:	NP_610202.3	Gene:	SmydA-5 / 35538	FlyBaseID:	FBgn0033061	Length:	553	Species:	Drosophila melanogaster
Sequence 2:	NP_996733.1	Gene:	Smyd2 / 289372	RGDID:	727785	Length:	433	Species:	Rattus norvegicus

Alignment Length:	329	Identity:	67/329 - (20%)
Similarity:	98/329 - (29%)	Gaps:	126/329 - (38%)

- Green bases have known domain annotations that are detailed below.

  Fly     6 ECPVCGVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQDAELGRYLKVTQNIAAGQIV 70
            ||..........|.|||...|||.|.||:.||.||..|                      :..:|
  Rat    53 ECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC----------------------SSMVV 95

  Fly    71 FIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQCRRCRWPVCSAGCKHESMECSVLSLG 135
            |       |..|..|:.
  Rat    96 F-------GENWNPSET------------------------------------------------ 105

  Fly   136 SGSPTRADARSLNDYFRGDALLVLKCLLLQRQSPTKWSALLEMQSH----EEERKGTDLYEEAEK 196
                .|..||          :|..:.:..:|....|..|:.|.:||    :.|:|  ||.:....
  Rat   106 ----VRLTAR----------ILAKQKMHPERTPSEKLLAVREFESHLDKLDNEKK--DLIQSDIA 154

  Fly   197 RVVTYLQKR--------FLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVELSGLFR 253
            .:..:..|.        .:....|.|.|..|....|:.|  .|                 |.:|.
  Rat   155 ALHQFYSKHLEFPDHSSLVVLFAQVNCNGFTIEDEELSH--LG-----------------SAIFP 200

  Fly   254 QACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILWGTQLRQHHLRLTKHFSCR 318
            ...:|.|:|.||....:  |.....|||..::..||.:..:|.::|:.|:.|...||.:..|:|.
  Rat   201 DVALMNHSCCPNVIVTY--KGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263

  Fly   319 CSRC 322
            |..|
  Rat   264 CREC 267

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.