DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and set5

DIOPT Version :10

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_588413.1 Gene:set5 / 2538853 PomBaseID:SPCC1739.05 Length:319 Species:Schizosaccharomyces pombe


Alignment Length:146 Identity:39/146 - (26%)
Similarity:55/146 - (37%) Gaps:34/146 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 EERKGTDLYEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVE 247
            ||...|...||.|.          ..||...:|:.:   ||     ..|...:|.:.|:...|  
pombe    50 EEALSTKTKEEQEA----------FHRLFNAHPDTM---GP-----FLGPFYSNALTIDETKG-- 94

  Fly   248 LSGLFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILWGTQLRQHHLR-- 310
              |:|.....|.|.|.||....::.:..||.|.|..|:..|:.:..||.:      |.:.|..  
pombe    95 --GMFLLGSRMNHDCSPNVKHTWNPRLDQVTVHAVRDIEAGEEILTTYID------LHKSHTERQ 151

  Fly   311 --LTKH--FSCRCSRC 322
              |.:|  |.|.||.|
pombe   152 KILLEHFGFKCYCSVC 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:460312
SET_SMYD <232..322 CDD:380997 26/95 (27%)
set5NP_588413.1 SET_SMYD 17..167 CDD:380997 38/144 (26%)
Blue background indicates that the domain is not in the aligned region.

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