DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and set-10

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_493620.2 Gene:set-10 / 185237 WormBaseID:WBGene00009370 Length:430 Species:Caenorhabditis elegans


Alignment Length:481 Identity:103/481 - (21%)
Similarity:182/481 - (37%) Gaps:124/481 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 EEPL--VVGPKW--------YLS-DADKEASNVPCVGC--YTPCRLGKHQCRRCRWPVCSAGCKH 124
            |:||  |:.|::        :|. |:.:|...:.|..|  .:.|.|   :|:|..|..|     |
 Worm     7 EQPLAAVLSPQFSELYCATCFLEIDSSQETEILTCDDCLAVSYCTL---KCQRKDWKSC-----H 63

  Fly   125 ESMECSVLSL-GSGSPTRADARSLNDYFRGDALLVLKCLLLQR--QSPTKWSALLE-MQSHEEER 185
            : .||.:|.. ||.:|.....:           |.::.||..|  |:|:...|:|| ::::.:|.
 Worm    64 Q-FECEILRCQGSSTPMTLTMK-----------LCIRVLLASRSTQTPSFNGAVLEDLETNYKEF 116

  Fly   186 KGTDLYEEAEKRVVTYL----QKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIE----L 242
            :.:..:.:....|:|.:    |..|...| :||         :.:..:|.::..:|.:|.    .
 Worm   117 RSSPEHNQFLSDVLTIISSSGQNIFPTSL-ETN---------KTIGIICSVLCNSFSIINEKRVE 171

  Fly   243 PSGVELSGLFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILWGTQLRQH 307
            |.|   |||:.......|:|.......|:.  .||.:|...: .....|.|:|.:.:..|..|:.
 Worm   172 PIG---SGLYVGVAKHNHSCASTSHVVFEG--NQVFLRTNQE-EYSKELTISYVSRMLPTSERRK 230

  Fly   308 HLRLTKHFSCRCSRC----LDPTEYGTYISALTCLGDV--NQTCG------------GTHLPVDP 354
            .:|.....:|:|..|    ||.....:......|.|.|  :..|.            ..|..::.
 Worm   231 TIRGVHFLTCQCEMCKNEELDLIGLSSKCRTKNCTGFVKGSGNCSVCEKLAFLPFEQSIHSTLNL 295

  Fly   355 LD--ENTQWKCDTCPMIVDGAYVAELQSHMTEQVEGLLAGCPSA-NQVELLLARLTHMLHPNHFH 416
            ||  ||.. |.:....:.:.||:.:|::    ..:.:||.|..| .|::..:|..:..|.     
 Worm   296 LDIIENLH-KTNQFTTVQELAYLQKLRA----DYQDILAECNVAILQLDEQIAYCSSSLE----- 350

  Fly   417 TFNLKHTLIQLYGNEAGLELGVLSNTQLERKLRLCG--------ELYNVCR---RLDPYS----- 465
                         |...|:|.:::....|..:...|        .||..|:   |:.|..     
 Worm   351 -------------NVNDLDLDLIAGRGSEHFITRLGIGAPEVTRRLYIGCKCISRISPSKRSVKL 402

  Fly   466 ---IKLAIYVTVILIEVAHTLQEQAR 488
               |||||..::|.....|::....|
 Worm   403 VKLIKLAIESSIISHGTHHSITNYLR 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009
SET 185..295 CDD:279228 23/117 (20%)
set-10NP_493620.2 zf-MYND 23..67 CDD:366792 12/52 (23%)
SET 57..247 CDD:394802 49/222 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2289
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.850

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