DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-5 and set-30

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_508850.2 Gene:set-30 / 180772 WormBaseID:WBGene00022499 Length:560 Species:Caenorhabditis elegans


Alignment Length:540 Identity:104/540 - (19%)
Similarity:172/540 - (31%) Gaps:163/540 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CPVC-GVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQDAELGRYLKVTQNIAAGQIV 70
            |..| |......|.:||:.::|.::.:......||..|.|..:..|..                 
 Worm    41 CWTCLGENVELTCEQCKVAKFCSKQCETSGAIDHKYECGPLKKCPDLN----------------- 88

  Fly    71 FIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQCRRCRWPVCSAGCKHESMECSVLSLG 135
                             ..|...:..||.|.....||.:                       |:.
 Worm    89 -----------------TDERMLIRIVGRYKDIHSGKDK-----------------------SID 113

  Fly   136 SGSPTRADARSLNDYFRGDALLVLKCLLLQRQSPTKWSALLEMQSHEEERKGTDLYEEAEKRVVT 200
            .....|...||:.:.                     |....:|:..|...|..            
 Worm   114 GFYNNRESKRSVMEI---------------------WEHCADMKKDENAMKSF------------ 145

  Fly   201 YLQKRFLCRLKQ---TNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVEL-----SGLFRQACM 257
               |:...|:||   || :|:.:.....||      ..||:.....|.|:.     .||:...|.
 Worm   146 ---KKTYDRVKQFGDTN-HLMDEEVTFQLH------SRNFINRHSISNVDYLREIGKGLYLDLCK 200

  Fly   258 MEHACQPNCDFQFDNKTQQV-AVRAGCDLRKGDHLRITYTNILWGTQLRQHHLRLTKHFSCRCSR 321
            .:|:|:||..:..:....:: |:....||...:....||..:......|:|.|:.|.:|.|.|.|
 Worm   201 YDHSCRPNAIYSCNGIVAKLRALHDNVDLENVETTHYTYIELPPCKIQRRHMLKETWYFECHCER 265

  Fly   322 CLDPTEYGTYISALTCLGDVNQT-------CGGTHLPVDPLDENTQWKCDTCPMIVDGAYVAELQ 379
            |.||.:  .:::::.|...:::|       ..|.....:|  |..:..||.|...:|..|:....
 Worm   266 CDDPDD--NWLTSVLCPVCISKTEYRKTIKLHGPEAYANP--ETLEIVCDRCSTTLDREYIFMAL 326

  Fly   380 SHM---TEQVEGLLAGCPSANQVELL------LARLTHMLHPNHFHTFNLKHTLIQLYGNEAGLE 435
            ..|   ...|||  |...:.:.:|||      |.....:|..::.:...|...:|.|        
 Worm   327 DGMRTIRRTVEG--AEDETKDPIELLKIYQGALMTYERILPMSNAYFCQLIAAMIPL-------- 381

  Fly   436 LGVLSNTQLERKLRLCG--ELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSLL 498
               :|...:.:|.||..  :|:..|.....|     :|......:..|.||        .|...|
 Worm   382 ---ISRVSMTKKERLVASLDLHLKCETFVRY-----VYRHAHPSKAMHFLQ--------MGQLHL 430

  Fly   499 GLAQSR-----LREAHMVLE 513
            .||..:     |.|||.:::
 Worm   431 ELANDKDAARCLIEAHRIMD 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009 9/36 (25%)
SET 185..295 CDD:279228 24/118 (20%)
set-30NP_508850.2 zf-MYND 41..78 CDD:366792 9/36 (25%)
SET_SMYD <179..266 CDD:380997 21/86 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2203
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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