DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-5 and set-14

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_496323.1 Gene:set-14 / 174662 WormBaseID:WBGene00011068 Length:429 Species:Caenorhabditis elegans


Alignment Length:558 Identity:102/558 - (18%)
Similarity:164/558 - (29%) Gaps:202/558 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CPVC--GVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQDAELGRYLKVTQNIAAGQI 69
            |..|  .:|..:.|:.|:.:.||.:|.|:..|..||..|:.            :|....:|...|
 Worm    26 CNQCLTSMAELKKCSACRRLAYCSQECQRADWKLHKVECKA------------IKTHNEVANDSI 78

  Fly    70 VFIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQCRRCRWPVCSAGCKHESMECSVLSL 134
            ..:..  :.|......|.:.||..:|.|                                     
 Worm    79 RLVMR--IAGKLSRNEDGEIEAYYIPGV------------------------------------- 104

  Fly   135 GSGSPTRADARSLNDYFRGDALLVLKCLLLQRQSPTKWSALLEMQSHEEERKGTDLYEEAEKRVV 199
                     ||:..:.               ...|:.:.|                  :.|..|.
 Worm   105 ---------ARNFQNL---------------EHHPSSYDA------------------DEESFVK 127

  Fly   200 TYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVELS-GLFRQACMMEHACQ 263
            .|.|...     ..:|:      .:::..:...:..|..|:...:|..:. ||..:.....|:|:
 Worm   128 EYFQFAI-----APHPD------RDLIKLIFQKVSINSFVVGNSTGNPIGVGLCIKLSAANHSCK 181

  Fly   264 PNCDFQFDNKTQQ---VAVRAGCDLRKGDHLRITYTNILWGTQLRQHHLRLTKHFSCRCSRCLDP 325
            |.....:.|:|..   |:......|....|   :|.:.|....:|:..|:....|.|:|..|||.
 Worm   182 PLTRVCYRNRTAMLVPVSSELPSTLEGACH---SYIDELMPRDMRRDTLKKKYKFLCQCDGCLDE 243

  Fly   326 TEYGTYISALTCLGDVNQTCGGTHLPVDPLDENTQWKCDTCPMIVDGAYVAELQSHMTEQVEGLL 390
                                          |.|.:.:..||.:.|.|        .|..:..|  
 Worm   244 ------------------------------DRNARMEAWTCGICVKG--------WMRNKENG-- 268

  Fly   391 AGCPSANQVELLLARLTHMLHPNHFHTFNLKHTLIQLYGNEAGLEL-GVLSN--TQLERKLRLCG 452
                   |.||    ....:..:|   |.|..|     ..|||:.. ..|:|  ..||.|..||.
 Worm   269 -------QCEL----CGWTMSKDH---FELCRT-----AEEAGIAARSRLANDAIPLETKRNLCE 314

  Fly   453 EL----------YNVCRRLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSL-LGLAQSRLR 506
            :|          :||.|    ..:...:|:..:      ..|.....|...||.| :.|......
 Worm   315 KLLDLFQDTLHDHNVHR----IPVLRCLYICSL------AAQNITAAAKTGGTLLSIMLVYQNTT 369

  Fly   507 EAHMVLEKEQES----VAGKKLN-EKLQMEIFE-CEKL 538
            :..::.:|.|.:    .||.|.. .||..||.| .||:
 Worm   370 DPAILFQKYQLAQLFCAAGAKTQATKLLQEIEEPLEKI 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009 12/37 (32%)
SET 185..295 CDD:279228 18/113 (16%)
set-14NP_496323.1 zf-MYND 26..64 CDD:280009 12/37 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2289
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.850

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