DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and set-18

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_871849.1 Gene:set-18 / 172949 WormBaseID:WBGene00044070 Length:507 Species:Caenorhabditis elegans


Alignment Length:585 Identity:107/585 - (18%)
Similarity:193/585 - (32%) Gaps:219/585 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CPVC--GVAASQ---ACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQDAELGRYLKVT-QNIA 65
            |..|  |.|..:   .|..|....||.:|.|...|..||..|            :.||.: .|:.
 Worm    49 CANCLRGPAPGEKLLRCGGCNFSMYCSKECQATAWLVHKPEC------------KRLKASFPNLP 101

  Fly    66 AGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGKHQCRRCRWPVCSAGCKHESMECS 130
            ..:::|:.:  |:....:|..                                            
 Worm   102 LTEVLFLSK--VIDRIQFLEK-------------------------------------------- 120

  Fly   131 VLSLGSGSPTRADARSLNDYFRGDALLVLKCLLLQRQSPTKWSALLEMQSHEEERKGTDLYEEAE 195
                                 .||.|.:        ::..|:|:|::   |:     .|:.::.|
 Worm   121 ---------------------NGDKLGI--------EAERKFSSLVD---HK-----VDIRDDEE 148

  Fly   196 KRVVTYLQKRF--------------------LCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVI 240
            |  :.:.:|.|                    .|:....:.::.|:.|.|:           .|.:
 Worm   149 K--MAHFEKIFEKMGAFRGEEMIEKGEFFDVFCKATINSHSIHTNAGNEV-----------GMAL 200

  Fly   241 ELPSGVELSGLFRQACMMEHACQPNCDFQFDNKTQQVAVR---AGCDLRKGDHLRITYTNILWGT 302
            :|  ||.         ...|:|:|.|...||.  .:|.:|   .|.|....:...|:|.::....
 Worm   201 DL--GVS---------KYNHSCRPTCSMVFDG--YRVCLRPLVPGVDAENTEEAFISYIDVGRSK 252

  Fly   303 QLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHLPVDPLDENTQWKCDTCP 367
            .:|:..|....:|:|.|:||:||.:     .|||.:...|..|....| ....:|.....|:.|.
 Worm   253 YIRRRDLNSRWYFNCECTRCMDPED-----DALTAIRCANPACDAPIL-TSETEEPMNIACEKCK 311

  Fly   368 MIVDGAYVAELQSHMTEQVEGLLAGCPS-----ANQVELLLARLTHMLHPNHFHTFNLKHTLIQL 427
            .||:...|...|.:|..........||:     ..:::.|||:...:|||::.:...|:..|..:
 Worm   312 TIVEEDTVKAAQEYMKTLPASFDPKCPAEIEALPGKLKELLAKAEQILHPSNVYVARLRTALFHV 376

  Fly   428 YGNEAGLELGVLS--NTQLERKLRLC-----------------------------------GELY 455
            .|.   |.:..||  :||:....::|                                   ..::
 Worm   377 TGT---LTMDNLSSMHTQIYNNYKMCFPKADRHVGFQLLHIVKALIEKDERDEAMPYAFDAMNIF 438

  Fly   456 NVCRRLD-PYSIK-LAIYVTVILIEVAHTLQEQARRAPAEGTSLLGLAQSR-------LREAHMV 511
            .||..|| ||.:: ||::.         .|:::..::..|...|...:.:|       |:.|:|:
 Worm   439 EVCFGLDHPYYLQTLALWT---------YLEKKIPKSTEELVQLTNFSDNRPIDIVSLLKRANML 494

  Fly   512  511
             Worm   495  494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009 13/40 (33%)
SET 185..295 CDD:279228 24/132 (18%)
set-18NP_871849.1 zf-MYND 49..90 CDD:366792 13/40 (33%)
SET 82..274 CDD:394802 49/312 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2289
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.950

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