DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and Smyd1

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_001153599.1 Gene:Smyd1 / 12180 MGIID:104790 Length:490 Species:Mus musculus


Alignment Length:377 Identity:83/377 - (22%)
Similarity:142/377 - (37%) Gaps:90/377 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCRLGK-HQCRRCRWP-V 117
            ||.||.|:...|..::|.|       :.|.:.......|..|..|:.  |..| |:|.:|::. .
Mouse    18 GRGLKATKEFWAADVIFAE-------RAYSAVVFDSLINFVCHTCFK--RQEKLHRCGQCKFAHY 73

  Fly   118 CSAGCKHESM-----ECSVLSLGSGSPT---RADARSLNDYFRGDALLVLKCLLLQRQSPTKWSA 174
            |...|:.::.     ||:.:......|.   |..||.:....|....|...||:          :
Mouse    74 CDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLV----------S 128

  Fly   175 LLEMQSH-----EEERKGTDLYEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIE 234
            :.::|:|     |||:|      |....|.|:||..         |........:.:..:.|:|.
Mouse   129 VDDLQNHVEHFGEEEQK------ELRVDVDTFLQYW---------PPQSQQFSMQYISHIFGVIN 178

  Fly   235 TNFMVIELPSGVEL--SGLFRQACMMEHACQPNCDFQFDN----------KTQ-QVAVRAGCDLR 286
            .|...:....|::.  .|:|....::.|.|.|||...|:|          .|| ::.:||...:.
Mouse   179 CNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKIS 243

  Fly   287 KGDHLRITYTNILWGTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHLP 351
            :|:.|.::|.:.|..::.|:..|:...:|.|.|..|....:...:::|                .
Mouse   244 EGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAA----------------K 292

  Fly   352 VDP------LDENTQWKCDTCPMI----VDGAY--VAELQSHMTEQVEGLLA 391
            .||      :.|..|:..||...|    .:|.|  |.:|.....|:.|.:.|
Mouse   293 EDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA 344

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009
SET 185..295 CDD:279228 26/122 (21%)
Smyd1NP_001153599.1 SET_SMYD1 7..281 CDD:380924 68/296 (23%)