DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-5 and smyd3

DIOPT Version :9

Sequence 1:NP_610202.3 Gene:SmydA-5 / 35538 FlyBaseID:FBgn0033061 Length:553 Species:Drosophila melanogaster
Sequence 2:XP_031758360.1 Gene:smyd3 / 100494527 XenbaseID:XB-GENE-854970 Length:448 Species:Xenopus tropicalis


Alignment Length:532 Identity:103/532 - (19%)
Similarity:184/532 - (34%) Gaps:174/532 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCYTPCR--------------- 104
            |..::..::::.|..|.|.||.|                      ||.||               
 Frog    35 GNGVRALKDMSHGLTVMIAEPYV----------------------YTVCRIKTACDHCLHRKEKL 77

  Fly   105 LGKHQCRRCRWPVCSAGCKHES-----MECSVL--SLGSGSPTRADARSLNDYFRGDALLVLKCL 162
            |...||:..|:  |::.|:.::     .||..|  :|.:..|             ....||.|.:
 Frog    78 LRCSQCKVARY--CNSHCQRKAWQGHKRECKCLRSTLPNVPP-------------NSVRLVGKII 127

  Fly   163 LLQRQSPTKWS----ALLEMQSHEEERKGTDLYEEAEKRVVTYLQ---KRFLCRLKQTNPNLLTD 220
            ....|.|...|    .:.::|||.:|  .::..::..:.:.|.||   |..:..:.|..|.... 
 Frog   128 FKMLQKPDTASEELYTISDLQSHIKE--ASEEVKDGLRHLATALQHYLKEEIQEISQLPPGFQV- 189

  Fly   221 CGPEMLHRLCGIIETNFMVIELPSGVELS----GLFRQACMMEHACQPNCDFQFDNKTQQVAVRA 281
              .|...::...:..|...|   |..|:.    ||:....::.|:|.|||...|:...  :.:|.
 Frog   190 --LEYFGKVSAKVTCNSFTI---SDGEMQDVGVGLYPSMSLLNHSCDPNCVIVFEGTC--LLLRT 247

  Fly   282 GCDLRKGDHLRITYTNILWGTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCG 346
            ..::.||:.|.|:|.::...||.|:..|:....|.|.|.|||                       
 Frog   248 VKEIPKGEELTISYIDVKMPTQGRRDQLQRQYCFLCDCQRCL----------------------- 289

  Fly   347 GTHLPVDPLDENTQWKCDTCPMIVDGAYVAELQSHMTEQVEGLLAG-CPSANQVELLLARLTHML 410
                                               :.::.|.:||| ..::.:||..::||..:|
 Frog   290 -----------------------------------LRDKDEDMLAGDAEASREVESSVSRLEELL 319

  Fly   411 HPNHF-HTFNLKHTLIQLY---------------GNEAGLELGVLSNTQLERKLRLCGELYNVCR 459
            ..|.. ...||..||:..|               ..:|.::||:....           |:...|
 Frog   320 SQNTAEEALNLCKTLMNRYYLPDKNIYQLKILDCAMDASIDLGLWEEA-----------LHFGLR 373

  Fly   460 RLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSLLGLAQSRLREAHMVLEKEQESVAGKKL 524
            .|:|||:..:.|..|..::    |.:..:....:|  |...|...|::|..:::.......|:  
 Frog   374 TLEPYSLYYSNYHPVRAVQ----LMKVGKLQNYQG--LFAEAMKTLKQAFDIMKVTHGRDHGQ-- 430

  Fly   525 NEKLQMEIFECE 536
            .::|...:.:||
 Frog   431 TQQLAELMNDCE 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-5NP_610202.3 zf-MYND 7..43 CDD:280009
SET 185..295 CDD:279228 24/116 (21%)
smyd3XP_031758360.1 SET_SMYD3 24..289 CDD:380980 65/300 (22%)
zf-MYND 67..105 CDD:396356 6/39 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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