DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)k09848 and AT1G29320

DIOPT Version :9

Sequence 1:NP_001188867.1 Gene:l(2)k09848 / 35536 FlyBaseID:FBgn0284246 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001323159.1 Gene:AT1G29320 / 839806 AraportID:AT1G29320 Length:469 Species:Arabidopsis thaliana


Alignment Length:435 Identity:103/435 - (23%)
Similarity:175/435 - (40%) Gaps:86/435 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LYVGTHTGSFKHLVPASEKTPYGQSNLSDLCALDKDSRVTSLAFGN---DDQTE----ILLGRAK 76
            |.|....|:.:.:.|.:....:..|...|.....:|:.:::|....   |||||    :|....|
plant    68 LAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQTERSCTLLTCTKK 132

  Fly    77 DAVEIHS--FTEKGHSRNTVSFNAAPIVGLARYNDKLIAGIGNGEIQSLELEANDESEPVVIATG 139
            ..|.:.|  |.: .|..:|  .:|:|         |.....|:|||...:::.::          
plant   133 GDVSLRSVKFPD-AHGNST--DDASP---------KTWKACGSGEILVGKVDGSE---------- 175

  Fly   140 DQMDHLRQCAQVKSIVATGGKERQNNLKVYDLNADGKQIFTSKNLPNDYLQLEVPVWDSDIGFV- 203
                         :....|||..:.|  ::||....| |:::|..|.:.|.:..|.|.:...|: 
plant   176 -------------NFSLFGGKRVEAN--IWDLEQCTK-IWSAKCPPKNNLGIFTPTWFTSATFLS 224

  Fly   204 -DGPSVLATCSRTGYVRIYDTRKQRRPVACFASEEHGMSFTTLVAKGNFIYTGTTMGALKAFDTR 267
             |......|.:::..||:||...|||||..|...|..::.......|:.||.|.....|.:||.|
plant   225 KDDHRKFVTGTKSHQVRLYDISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIR 289

  Fly   268 RMKTHVHTYKG-FTGGISDLHLDATGRFLSSASLDRYVRIHDSETTVLLYQCYVKSKATKILI-R 330
            ..|. :.::.| .:|.|..:......:.::|..||||:|::|.:|..|:...::|...|.::. .
plant   290 TGKL-LGSFLGKCSGSIRSVVRHPQHQVIASCGLDRYLRVYDVKTRQLISAVFLKQHLTGLVFDS 353

  Fly   331 PFENEAR----------VTEEPEEVADLQMD-------RNVSENKSVNATSVDNEYEDMFDQMPT 378
            .|..||.          .|||...:.|.:.|       :.....|...:..:..|.||       
plant   354 GFSGEAETAVANTVAEAATEEKMTIMDQEDDETEKAPVKRKKSKKEKRSREIVFEGED------- 411

  Fly   379 VGDSDNESEEEMSNIKLSKADLKRRSSEK--------SLKNKKKK 415
              |.:||.|.|.:.:|..|:..::||.||        .|::||.:
plant   412 --DEENEDEIEKAPVKTKKSKKEKRSREKVSEGEEKDELRSKKTR 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)k09848NP_001188867.1 WD40 36..>327 CDD:225201 73/302 (24%)
WD40 55..318 CDD:295369 68/274 (25%)
WD40 repeat 146..184 CDD:293791 9/37 (24%)
WD40 repeat 240..277 CDD:293791 9/36 (25%)
WD40 repeat 283..309 CDD:293791 7/25 (28%)
AT1G29320NP_001323159.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 81 1.000 Domainoid score I2938
eggNOG 1 0.900 - - E1_KOG3881
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 82 1.000 Inparanoid score I2358
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1439033at2759
OrthoFinder 1 1.000 - - FOG0004298
OrthoInspector 1 1.000 - - oto3167
orthoMCL 1 0.900 - - OOG6_103653
Panther 1 1.100 - - LDO PTHR16038
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3557
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.830

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