DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa2-R and nmbr

DIOPT Version :9

Sequence 1:NP_001356958.1 Gene:CCHa2-R / 35535 FlyBaseID:FBgn0033058 Length:501 Species:Drosophila melanogaster
Sequence 2:XP_690325.2 Gene:nmbr / 561834 ZFINID:ZDB-GENE-041014-369 Length:372 Species:Danio rerio


Alignment Length:366 Identity:135/366 - (36%)
Similarity:201/366 - (54%) Gaps:46/366 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 SADGGIVPYVPVLDRPETY------IVTVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYILS 110
            ::|||           ||.      ::..:|.||..||:|||.|||.||....:||::||.:|.|
Zfish    20 TSDGG-----------ETVHFIIQCVIPSVYILIITVGLLGNITLVKIFITTSAMRSVPNIFISS 73

  Fly   111 LALADLLVILVCVPVATIVYTQESWPFERNMCRISEFFKDISIGVSVFTLTALSGERYCAIVNPL 175
            ||:.|||:::.||||....|..|.|.|....|::....:..|:|||||||||||.:|:.|||||:
Zfish    74 LAVGDLLLLVTCVPVDAFRYFYEEWIFGTVACKMIPVIQLTSVGVSVFTLTALSADRHKAIVNPM 138

  Fly   176 RKLQTKPLTVFT---AVMIWILAILLGMPSVLFSDIKSYPVFTATGNMTIEVCSPF-----RDPE 232
             .:|:.....:|   |:.||::::||.:|..:||.:...|    ..|.|...|.|:     ..|:
Zfish   139 -DIQSSSAVFWTCLKAITIWVVSVLLAIPEAVFSQVVHMP----DKNTTFTACVPYPLSNEMHPK 198

  Fly   233 YAKFMVAGKALVYYLLPLSIIGALYIMMAKRLHMSARNMPGEQQSMQSRTQARARLHVARMVVAF 297
            ....|:   .|||:|:|||||...|..:|:.|..||.:|||| .|..|:.|...|..:|::|:.|
Zfish   199 IHSIMI---FLVYFLIPLSIISVYYYHIARTLIKSAHDMPGE-ISEHSKRQTETRKRLAKIVLVF 259

  Fly   298 VVVFFICFFPYHVFELWYHF-YPTAEEDFDEFWNVLRIVGFCTSFLNSCVNPVALYCVSGVFRQH 361
            |.:|.:|:||.||..::..| |...:......  ::.:|....||.:|||||.|||.:|..||:|
Zfish   260 VGLFALCWFPNHVLYMYRSFNYRQIDSSLSHL--IITLVARVLSFSSSCVNPFALYLLSESFRRH 322

  Fly   362 FNRYLCCICVKRQPHLRQHSTATGMMDNTSVM---SMRRST 399
            ||..|.|    ||...::.:|:  .:.:||.:   |:|:||
Zfish   323 FNNQLLC----RQRKYQERNTS--YLQSTSAIRMTSIRKST 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa2-RNP_001356958.1 7tmA_Bombesin_R-like 70..362 CDD:320593 116/306 (38%)
TM helix 1 71..97 CDD:320593 13/25 (52%)
TM helix 2 104..130 CDD:320593 13/25 (52%)
TM helix 3 142..172 CDD:320593 15/29 (52%)
TM helix 4 182..202 CDD:320593 6/22 (27%)
TM helix 5 234..259 CDD:320593 11/24 (46%)
TM helix 6 285..315 CDD:320593 11/29 (38%)
TM helix 7 330..355 CDD:320593 11/24 (46%)
nmbrXP_690325.2 7tm_1 49..310 CDD:278431 103/271 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 173 1.000 Domainoid score I3640
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 214 1.000 Inparanoid score I3604
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1153238at2759
OrthoFinder 1 1.000 - - FOG0001846
OrthoInspector 1 1.000 - - mtm6429
orthoMCL 1 0.900 - - OOG6_106543
Panther 1 1.100 - - O PTHR45695
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1046
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.930

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