DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa2-R and tacr3a

DIOPT Version :9

Sequence 1:NP_001356958.1 Gene:CCHa2-R / 35535 FlyBaseID:FBgn0033058 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_001243567.1 Gene:tacr3a / 555482 ZFINID:ZDB-GENE-090312-106 Length:399 Species:Danio rerio


Alignment Length:374 Identity:100/374 - (26%)
Similarity:168/374 - (44%) Gaps:50/374 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 TVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYILSLALADLLVILVCVPVATIVYTQESWPF 137
            :|.|:.|..:.|.||..::.|...|:.||.:.|.::|:||.:|..:......:..:..|...|.|
Zfish    29 SVAYSSILAIAVFGNLIVMWIILAHKRMRTVTNYFLLNLAFSDASMAAFNTLINFVYATHGDWYF 93

  Fly   138 ERNMCRISEFFKDISIGVSVFTLTALSGERYCAIVNPLRKLQTKPLTVFTAVMIWILAILLGMPS 202
            ....|:...||...|:..|:::::|::.:||.||::||:...:...|....|.||:||::|..|.
Zfish    94 GEAYCKFHNFFPVTSVFASIYSMSAIAVDRYMAIIHPLKPRLSATATKVIIVCIWVLAVVLAFPL 158

  Fly   203 VLFSDIKSYPVFTATGNMTIEVC-----SPFRDPEYAKFMVAGKALVYYLLPLSIIGALYIMMAK 262
            ..||.||..|..|        :|     .|..||.....:|   |::.|:|||.::|..|.::. 
Zfish   159 CFFSTIKKLPKRT--------LCYVAWPRPSEDPFMYHIIV---AMLVYVLPLVVMGINYTIVG- 211

  Fly   263 RLHMSARNMPGEQQSMQSRTQARARLHVARMVVAFVVVFFICFFPYHVFELWYHFYPTAEEDFDE 327
             |.:....:||: .|...:.|.||:..|.:|::..||.|..|:.||||:     |..|.......
Zfish   212 -LTLWGGEIPGD-SSDNYQGQLRAKRKVVKMMIIVVVTFAFCWLPYHVY-----FLVTGLNKQLA 269

  Fly   328 FWNVLRIVGFCTSFL---NSCVNPVALYCVSGVFRQHFNR-YLCCICVK------------RQPH 376
            .|..::.:.....:|   ::..||:...|::..||..|.| :..|..|:            |...
Zfish   270 RWKFIQQIYLSIMWLAMSSTMYNPIIYCCLNSRFRAGFKRVFRWCPFVQVSDYDELELRAMRHKV 334

  Fly   377 LRQHSTATGMMDNTSVMSM----RRSTYVGGTAGNLRASLHRNSNHGVG 421
            .||.|..|.....|:|:::    ..:|..|      |.||..:.:|..|
Zfish   335 ARQSSMYTMSRMETTVVTVCDPSEPNTQPG------RKSLLNHHHHHNG 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa2-RNP_001356958.1 7tmA_Bombesin_R-like 70..362 CDD:320593 82/296 (28%)
TM helix 1 71..97 CDD:320593 7/23 (30%)
TM helix 2 104..130 CDD:320593 5/25 (20%)
TM helix 3 142..172 CDD:320593 9/29 (31%)
TM helix 4 182..202 CDD:320593 7/19 (37%)
TM helix 5 234..259 CDD:320593 8/24 (33%)
TM helix 6 285..315 CDD:320593 12/29 (41%)
TM helix 7 330..355 CDD:320593 4/27 (15%)
tacr3aNP_001243567.1 7tm_4 32..>168 CDD:304433 41/135 (30%)
7tm_1 42..296 CDD:278431 75/272 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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