DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa2-R and Brs3

DIOPT Version :9

Sequence 1:NP_001356958.1 Gene:CCHa2-R / 35535 FlyBaseID:FBgn0033058 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_690058.1 Gene:Brs3 / 260319 RGDID:628645 Length:399 Species:Rattus norvegicus


Alignment Length:347 Identity:124/347 - (35%)
Similarity:193/347 - (55%) Gaps:17/347 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VTVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYILSLALADLLVILVCVPVATIVYTQESWP 136
            :.:.|.:|..||:|||..|:.:||:.:||:.:||.:|.|||..|||::|.||||....|..|.|.
  Rat    50 IYITYAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWL 114

  Fly   137 FERNMCRISEFFKDISIGVSVFTLTALSGERYCAIVNPLRKLQTKPL--TVFTAVMIWILAILLG 199
            |.:..|::..|.:..|:||||||||.||.:||.|:|.||.:..:..:  |...|..|||:|::..
  Rat   115 FGKVGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPSNAILKTCAKAGGIWIMAMIFA 179

  Fly   200 MPSVLFSDIKSYPVFTATGNMTIEVCSPFRDPEYAKFMVAGKA--LVYYLLPLSIIGALYIMMAK 262
            :|..:||::  |.......|:|.|.|:.:...|.....:....  ||:|::|||||...|.::|:
  Rat   180 LPEAIFSNV--YTFQDPNRNVTFESCNSYPISERLLQEIHSLLCFLVFYIIPLSIISVYYSLIAR 242

  Fly   263 RLHMSARNMPGEQQSMQSRTQARARLHVARMVVAFVVVFFICFFPYHVFELWYHF-YPTAEEDFD 326
            .|:.|..|:|.|:|| .:|.|..:|..:|:.|:..|.:|.:|:.|.|:..|::.| |.:..|..|
  Rat   243 TLYKSTLNIPTEEQS-HARKQIESRKRIAKTVLVLVALFALCWLPNHLLYLYHSFTYESYAEPSD 306

  Fly   327 EFWNVLRIVGFCTSFLNSCVNPVALYCVSGVFRQHFNRYLCCICVKR-QPHL----RQHSTATGM 386
            ..: |:.|.....:|.||||||.|||.:|..|::||...|||...:: :|.|    ..:.|..|.
  Rat   307 VPF-VVTIFSRVLAFSNSCVNPFALYWLSKTFQKHFKAQLCCFKAEQPEPPLGDTPLNNLTVMGR 370

  Fly   387 MDNTS---VMSMRRSTYVGGTA 405
            :..|.   |..:..:.:.|.||
  Rat   371 VPATGSAHVSEISVTLFSGSTA 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa2-RNP_001356958.1 7tmA_Bombesin_R-like 70..362 CDD:320593 110/294 (37%)
TM helix 1 71..97 CDD:320593 10/24 (42%)
TM helix 2 104..130 CDD:320593 14/25 (56%)
TM helix 3 142..172 CDD:320593 16/29 (55%)
TM helix 4 182..202 CDD:320593 6/21 (29%)
TM helix 5 234..259 CDD:320593 9/26 (35%)
TM helix 6 285..315 CDD:320593 9/29 (31%)
TM helix 7 330..355 CDD:320593 12/24 (50%)
Brs3NP_690058.1 7tm_1 64..328 CDD:278431 99/267 (37%)
7tm_4 <137..347 CDD:304433 75/213 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 177 1.000 Domainoid score I3490
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1307
Inparanoid 1 1.050 219 1.000 Inparanoid score I3481
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1153238at2759
OrthoFinder 1 1.000 - - FOG0001846
OrthoInspector 1 1.000 - - mtm9138
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45695
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1046
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1212.030

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