DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa2-R and tkr-2

DIOPT Version :9

Sequence 1:NP_001356958.1 Gene:CCHa2-R / 35535 FlyBaseID:FBgn0033058 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_500930.1 Gene:tkr-2 / 183595 WormBaseID:WBGene00016761 Length:391 Species:Caenorhabditis elegans


Alignment Length:311 Identity:83/311 - (26%)
Similarity:140/311 - (45%) Gaps:16/311 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 PYV-PVLDRPETYIVTVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYILSLALADLLVILVC 122
            |:| |::.:   ....:|:||...:.::||.|::.|...||.||::.|.|:.:||:||..:.:..
 Worm    53 PFVHPIVSQ---IFYGILFTLTIFLALMGNFTVMWIILYHRQMRSVTNYYLFNLAVADASISVFN 114

  Fly   123 VPVATIVYTQESWPFERNMCRISEFFKDISIGVSVFTLTALSGERYCAIVNPLRKLQTKPLTVFT 187
            ...:........|.|....|||:.......|..||||:..:|.|||.||::||:|...:..||..
 Worm   115 TGFSWSYNYYYVWKFGSFYCRINNLMGITPICASVFTMIVMSIERYYAIIHPLKKRPGRRSTVTI 179

  Fly   188 AVMIWILAILLGMPSVLFSDIKSYPVFTATGNMTIEVCSPFRDPEYAKFMVA-----GKALVYYL 247
            .:|||.:|.|.|:|:.|.|.:..|..:.........:|.....|...:.::.     |...|.|:
 Worm   180 IIMIWFMAFLFGVPAFLASKVDVYYFYDGYTLYENPLCLADNYPGGNESLLGQVYNNGLITVQYI 244

  Fly   248 LPLSIIGALYIMMAKRLHMSARNMPGEQQSMQSRTQARARLHVARMVVAFVVVFFICFFPYHVFE 312
            |||.|:.|.|..:...|...  ...|:.:..:|   ..|:...:.|:...|.:|.|.:|||:.:.
 Worm   245 LPLCILSAAYYRVGVELRKD--KTVGDVRHAKS---VAAKKKASIMLAVVVFIFMIVWFPYNAYY 304

  Fly   313 LWYHFYPTAEEDFDEFWNVLRIVGFCTSFLNSCVNPVALYCVSGVFRQHFN 363
            |..|............:..:.|  :.....::..|||..|.::..||..|:
 Worm   305 LTLHLVEPIGNKMLSLYIYINI--YWLGMSSTVFNPVIYYFMNKRFRVGFH 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa2-RNP_001356958.1 7tmA_Bombesin_R-like 70..362 CDD:320593 79/296 (27%)
TM helix 1 71..97 CDD:320593 7/25 (28%)
TM helix 2 104..130 CDD:320593 6/25 (24%)
TM helix 3 142..172 CDD:320593 13/29 (45%)
TM helix 4 182..202 CDD:320593 8/19 (42%)
TM helix 5 234..259 CDD:320593 9/29 (31%)
TM helix 6 285..315 CDD:320593 9/29 (31%)
TM helix 7 330..355 CDD:320593 5/24 (21%)
tkr-2NP_500930.1 7tmA_TACR 62..352 CDD:320512 79/296 (27%)
TM helix 1 64..88 CDD:320512 7/23 (30%)
TM helix 2 97..119 CDD:320512 6/21 (29%)
TM helix 3 135..157 CDD:320512 7/21 (33%)
TM helix 4 178..194 CDD:320512 6/15 (40%)
TM helix 5 232..255 CDD:320512 8/22 (36%)
TM helix 6 280..305 CDD:320512 7/24 (29%)
TM helix 7 320..345 CDD:320512 5/26 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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