DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa2-R and Nmbr

DIOPT Version :10

Sequence 1:NP_001356958.1 Gene:CCHa2-R / 35535 FlyBaseID:FBgn0033058 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_032729.1 Gene:Nmbr / 18101 MGIID:1100525 Length:390 Species:Mus musculus


Alignment Length:304 Identity:122/304 - (40%)
Similarity:175/304 - (57%) Gaps:13/304 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 IVTVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYILSLALADLLVILVCVPVATIVYTQESW 135
            ::..||.:|..||:|||..||.||..:.:|||:||.:|.:||..|||::|.||||....|..:.|
Mouse    45 VIPSLYLIIISVGLLGNIMLVKIFLTNSAMRNVPNIFISNLAAGDLLLLLTCVPVDASRYFFDEW 109

  Fly   136 PFERNMCRISEFFKDISIGVSVFTLTALSGERYCAIVNPLRKLQTKPLTVFT---AVMIWILAIL 197
            .|.:..|::....:..|:|||||||||||.:||.|||||: .:||..:.::|   ||.||::::|
Mouse   110 VFGKLGCKLIPAIQLTSVGVSVFTLTALSADRYRAIVNPM-DMQTSGVLLWTSLKAVGIWVVSVL 173

  Fly   198 LGMPSVLFSDIKSYPVFTATGNMTIEVCSPF--RDPEYAKFMVAGKALVYYLLPLSIIGALYIMM 260
            |.:|..:||::..   ..:..|.:...|.|:  .|..:.|.......|||:|:||.||...|..:
Mouse   174 LAVPEAVFSEVAR---IGSLDNSSFTACIPYPQTDELHPKIHSVLIFLVYFLIPLVIISIYYYHI 235

  Fly   261 AKRLHMSARNMPGEQQSMQSRTQARARLHVARMVVAFVVVFFICFFPYHVFELWYHF-YPTAEED 324
            ||.|..||.|:|||... .::.|...|..:|::|:.||..|..|:||.||..|:..| |...:..
Mouse   236 AKTLIKSAHNLPGEYNE-HTKKQMETRKRLAKIVLVFVGCFVFCWFPNHVLYLYRSFNYKEIDPS 299

  Fly   325 FDEFWNVLRIVGFCTSFLNSCVNPVALYCVSGVFRQHFNRYLCC 368
            ....  ::.:|....||.||||||.|||.:|..||:|||..|||
Mouse   300 LGHM--IVTLVARVLSFSNSCVNPFALYLLSESFRKHFNSQLCC 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa2-RNP_001356958.1 7tmA_Bombesin_R-like 70..362 CDD:320593 116/296 (39%)
TM helix 1 71..97 CDD:320593 12/25 (48%)
TM helix 2 104..130 CDD:320593 13/25 (52%)
TM helix 3 142..172 CDD:320593 16/29 (55%)
TM helix 4 182..202 CDD:320593 7/22 (32%)
TM helix 5 234..259 CDD:320593 10/24 (42%)
TM helix 6 285..315 CDD:320593 12/29 (41%)
TM helix 7 330..355 CDD:320593 12/24 (50%)
NmbrNP_032729.1 7tm_GPCRs 44..335 CDD:475119 116/296 (39%)
TM helix 1 46..70 CDD:320253 12/23 (52%)
TM helix 2 79..101 CDD:320253 12/21 (57%)
TM helix 3 117..139 CDD:320253 11/21 (52%)
TM helix 4 162..178 CDD:320253 6/15 (40%)
TM helix 5 210..233 CDD:320253 9/22 (41%)
TM helix 6 265..287 CDD:320253 10/21 (48%)
TM helix 7 303..328 CDD:320253 12/26 (46%)

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