DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCHa2-R and Brs3

DIOPT Version :9

Sequence 1:NP_001356958.1 Gene:CCHa2-R / 35535 FlyBaseID:FBgn0033058 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_033896.2 Gene:Brs3 / 12209 MGIID:1100501 Length:399 Species:Mus musculus


Alignment Length:302 Identity:112/302 - (37%)
Similarity:173/302 - (57%) Gaps:7/302 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VTVLYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNTYILSLALADLLVILVCVPVATIVYTQESWP 136
            :.:.|..|..||:|||..|:.:||:.:||:.:||.:|.|||..|||::|.||||....|..|.|.
Mouse    50 IYITYAGIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLTCVPVDATHYLAEGWL 114

  Fly   137 FERNMCRISEFFKDISIGVSVFTLTALSGERYCAIVNPLRKLQTKPL--TVFTAVMIWILAILLG 199
            |.:..|::..|.:..|:||||||||.||.:||.|:|.||.:.....:  |...|..|||::::..
Mouse   115 FGKVGCKVLSFIRLTSVGVSVFTLTILSADRYKAVVKPLERQPPNAILKTCAKAGGIWIVSMIFA 179

  Fly   200 MPSVLFSDIKSYPVFTATGNMTIEVCSPFRDPEYAKFMVAGKA--LVYYLLPLSIIGALYIMMAK 262
            :|..:||::  |.......|:|.|.|:.:...|.....:....  ||:|::|||||...|.::|:
Mouse   180 LPEAIFSNV--YTFQDPNRNVTFESCNSYPISERLLQEIHSLLCFLVFYIIPLSIISVYYSLIAR 242

  Fly   263 RLHMSARNMPGEQQSMQSRTQARARLHVARMVVAFVVVFFICFFPYHVFELWYHFYPTAEEDFDE 327
            .|:.|..|:|.|:|| .:|.|..:|..:|:.|:..|.:|.:|:.|.|:..|::.|...:..:..:
Mouse   243 TLYKSTLNIPTEEQS-HARKQIESRKRIAKTVLVLVALFALCWLPNHLLYLYHSFTYESYANHSD 306

  Fly   328 FWNVLRIVGFCTSFLNSCVNPVALYCVSGVFRQHFNRYLCCI 369
            ...|:.|.....:|.||||||.|||.:|..|:|||...|||:
Mouse   307 VPFVIIIFSRVLAFSNSCVNPFALYWLSKTFQQHFKAQLCCL 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa2-RNP_001356958.1 7tmA_Bombesin_R-like 70..362 CDD:320593 107/293 (37%)
TM helix 1 71..97 CDD:320593 10/24 (42%)
TM helix 2 104..130 CDD:320593 14/25 (56%)
TM helix 3 142..172 CDD:320593 16/29 (55%)
TM helix 4 182..202 CDD:320593 5/21 (24%)
TM helix 5 234..259 CDD:320593 9/26 (35%)
TM helix 6 285..315 CDD:320593 9/29 (31%)
TM helix 7 330..355 CDD:320593 12/24 (50%)
Brs3NP_033896.2 7tm_1 64..328 CDD:278431 95/266 (36%)
7tm_4 <137..347 CDD:304433 72/212 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 178 1.000 Domainoid score I3534
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1307
Inparanoid 1 1.050 225 1.000 Inparanoid score I3485
Isobase 1 0.950 - 0 Normalized mean entropy S5926
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1153238at2759
OrthoFinder 1 1.000 - - FOG0001846
OrthoInspector 1 1.000 - - mtm8893
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45695
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4897
SonicParanoid 1 1.000 - - X1046
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1313.010

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