DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCHa2-R and ackr3a

DIOPT Version :9

Sequence 1:NP_001356958.1 Gene:CCHa2-R / 35535 FlyBaseID:FBgn0033058 Length:501 Species:Drosophila melanogaster
Sequence 2:XP_005167578.1 Gene:ackr3a / 100000764 ZFINID:ZDB-GENE-070301-5 Length:403 Species:Danio rerio


Alignment Length:337 Identity:86/337 - (25%)
Similarity:148/337 - (43%) Gaps:64/337 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 LYTLIFIVGVLGNGTLVIIFFRHRSMRNIPNT--YILSLALADLLVILVCVPVATIVYTQES-WP 136
            ||..||:||:..|.  ::::...||.|:...|  |||:||:|||.|: ..:||......|.. |.
Zfish    81 LYAFIFVVGLAANA--LVVWVNMRSQRHYHETHMYILNLAVADLCVV-ATLPVWVSSLAQGGHWA 142

  Fly   137 FERNMCRISEFFKDISIGVSVFTLTALSGERYCAIVNPLRKL---QTKPLTVFTAVMIWILAILL 198
            |.:..|:::.....:::..|:|.||.:|.:||.::|. .|::   :.:.:......:.|:||:..
Zfish   143 FGQAACKLTHLLFSVNLFASIFFLTCMSVDRYLSVVR-FREISHRRGRQVRRLVCAITWLLALFA 206

  Fly   199 GMPSVLF-SDIKS-YPVFTATGNMTIEVCSPFRDPE----------YAKFMVAGKALVYYLLPLS 251
            .:|...| ..:|| |...|        :|.|.. ||          ...|:|.|     :.:|..
Zfish   207 SVPDTYFLRSVKSQYSHVT--------LCLPVY-PEDNPLQWMVGIQLSFVVLG-----FAIPFP 257

  Fly   252 IIGALYIMMAKRLHMSARNMP--GEQQSMQSRTQARARLHVARMVVAFVVVFFICFFPYHVFEL- 313
            ||...|.::|..|..::.:.|  |:|....|:          ::::.::|||..|:.|||...| 
Zfish   258 IIAVSYALLANTLASTSTHSPSNGDQDRSVSK----------KVILMYIVVFIACWAPYHAVLLA 312

  Fly   314 ----WYHFYPTAEEDFDEFWNVLRIVGFCTSFLNSCVNPVALYCVSGVFRQHFNRYLCCICVKRQ 374
                .....|......:..:..|.:.. |.|.|:.|||||    |.....:|:...|      .:
Zfish   313 DALAMLGVLPLGCSSENGLFVALHLTQ-CLSLLHCCVNPV----VYSFAHRHYRYDL------MK 366

  Fly   375 PHLRQHSTATGM 386
            ..:.::||.||:
Zfish   367 AFIFKYSTRTGL 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCHa2-RNP_001356958.1 7tmA_Bombesin_R-like 70..362 CDD:320593 80/311 (26%)
TM helix 1 71..97 CDD:320593 7/21 (33%)
TM helix 2 104..130 CDD:320593 12/27 (44%)
TM helix 3 142..172 CDD:320593 8/29 (28%)
TM helix 4 182..202 CDD:320593 3/19 (16%)
TM helix 5 234..259 CDD:320593 7/24 (29%)
TM helix 6 285..315 CDD:320593 8/34 (24%)
TM helix 7 330..355 CDD:320593 9/24 (38%)
ackr3aXP_005167578.1 7tm_1 93..353 CDD:278431 73/292 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.